FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECOHS (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O9:H4 (strain HS) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNS-RGKKPVPYAFYSNVCE---LAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R    F   +LYN+ R  K     F +  C+   L   SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGGWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 55/211 (26.07%), Postives = 97/211 (45.97%), Query Frame = 1
Query:   82 ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRGKKPVPYAF---YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + +LS E+ LI+     E ++    + VT            V  A  GV+++ +    R+GI V N  +  S  AA+   G+++ + R+I  A   ++ G W +     +G++L GK +GI+GLG IG +VA R+Q+FG   + Y+      V  +F      + E+    D + +   L   T  ++N        K   + N  RG ++
Sbjct:   33 KQNLSKEE-LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER--KKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 55/211 (26.07%), Postives = 97/211 (45.97%), Query Frame = 1
Query:   82 ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRGKKPVPYAF---YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + +LS E+ LI+     E ++    + VT            V  A  GV+++ +    R+GI V N  +  S  AA+   G+++ + R+I  A   ++ G W +     +G++L GK +GI+GLG IG +VA R+Q+FG   + Y+      V  +F      + E+    D + +   L   T  ++N        K   + N  RG ++
Sbjct:   33 KQNLSKEE-LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER--KKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_CITK8 (Glyoxylate/hydroxypyruvate reductase B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 44/170 (25.88%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R + + +  ++ ++  AD  + L++   R++      ++ G W+K IG    G+ +  K +GIVG+G IGL +A+R    F   +LYN+R   P       A Y ++  L   +D + +   LT++T  +        +    I  N GRG V+
Sbjct:   72 TVSVGYDNFDVAALNARSVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKVGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHPEAEERFNARYCDLDTLLQAADFVCLILPLTEETHHLFGAAQFAKMKSSAIFINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 55/211 (26.07%), Postives = 97/211 (45.97%), Query Frame = 1
Query:   82 ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRGKKPVPYAF---YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + +LS E+ LI+     E ++    + VT            V  A  GV+++ +    R+GI V N  +  S  AA+   G+++ + R+I  A   ++ G W +     +G++L GK +GI+GLG IG +VA R+Q+FG   + Y+      V  +F      + E+    D + +   L   T  ++N        K   + N  RG ++
Sbjct:   33 KQNLSKEE-LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDR--KKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 54/211 (25.59%), Postives = 97/211 (45.97%), Query Frame = 1
Query:   82 ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRGKKPVPYAF---YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + +LS E+ LI+     E ++    + VT            V  A  GV+++ +    R+G+ V N  +  S  AA+   G+++ + R+I  A   ++ G W +     +G++L GK +GI+GLG IG +VA R+Q+FG   + Y+      V  +F      + E+    D + +   L   T  ++N        K   + N  RG ++
Sbjct:   33 KQNLSKEE-LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER--KKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 1
Query:   82 ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YN---------SRGKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + +LS E+ LI+     E ++    + VT            V  A  GV+++ +    R+GI V N  +  S  AA+   G+++ + R+I  A   ++ G W +     +G++L GK +GI+GLG IG +VA R+Q+FG   + Y+         S G + +P      +C      D + +   L   T  ++N        K   + N  RG ++
Sbjct:   33 KQNLSKEE-LIAELQDCEGLIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWER--KKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEQIWPLC------DFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_SHIDS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ghrB PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVYHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETYHLFGAEQFAKMKSSAIFINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 51/173 (29.48%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANA-GSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGK------KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            ++TA  G +H+ +      G+ VA   GS     A D  + +LI V R        +  G W+          L GK VG VG G IG  + +RL+ F CN+LY+ R K        +   F  ++ ++ +  D ++I   LT++T+ M ++E +  L K  +I N  RGA++
Sbjct:  120 LLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILV-RNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIM 291          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLU (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 48/171 (28.07%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L +    SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDSLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFINAGRGPVV 241          
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
GHRB_ECOHS2.241e-1127.06Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
SERA_PANTR2.927e-1126.07D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_HUMAN2.927e-1126.07D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
GHRB_CITK82.927e-1125.88Glyoxylate/hydroxypyruvate reductase B OS=Citrobac... [more]
SERA_MOUSE3.823e-1126.07D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_MACFA3.823e-1125.59D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_BOVIN3.823e-1125.81D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
GHRB_SHIDS3.823e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
FDH_SOLTU3.823e-1129.48Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
GHRB_ECOLU4.993e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
back to top