FC931855

Overview
NameFC931855
Unique NameFC931855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931855 vs. ExPASy Swiss-Prot
Match: CDPK4_PLABA (Calcium-dependent protein kinase 4 OS=Plasmodium berghei (strain Anka) GN=CPK4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 48/153 (31.37%), Postives = 77/153 (50.33%), Query Frame = 2
Query:    2 ISDSAKDLIRKMLCSQPSERLTAHEVLCHPWI----CENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRVIAESLSE-EEIAGLKEMFKAMDTDNSGAITFDELKAG----LRRYGSTLKD-------TEIRDLMDAADVDNSGTIDYGEFI 412
            ISD AKDLI+KML    + R++A + L H WI     ++ V  D       ++ +KQF +  KL + AL  +   L+  +E   L ++FK MD +  G +  +EL  G    L+  G    D        E+  ++ + D+D +G I+Y EF+
Sbjct:  297 ISDKAKDLIKKMLMYTSAVRISARDALEHEWIRLMTSKDNVNIDIPSLELSITNIKQFQSTQKLAQAALLYMGSKLTTIDETKELTKIFKKMDKNGDGQLDRNELIIGYKELLKLKGDDTTDLDNAAIEVEVDQILSSIDLDQNGYIEYSEFL 449          
BLAST of FC931855 vs. ExPASy Swiss-Prot
Match: CCAMK_PEA (Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (Fragment) OS=Pisum sativum GN=SYM9 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 2
Query:    2 ISDSAKDLIRKMLCSQPSERLTAHEVLCHPWICENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRVIAES-----------------LSEEEIAGLKEMFKAM--DTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMDAADVDNSGTIDYGEFI 412
            IS SAK+LI  +L   P++R +A E+L  PW+ +   A D  +DP ++SRL++F+A  KL+  A+  +  S                 L E+EI  L+  FK +  D DN+    F+E+   ++          I DL D    +  GT+D  E +
Sbjct:  283 ISQSAKNLISSLLTVDPAKRPSAQELLSDPWV-KGEKAKDDQMDPEIVSRLQRFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEDEIENLRMHFKKICADRDNATLCEFEEVLKAMKMPSLIPFAARIFDLFDN---NRDGTVDMREIL 434          
The following BLAST results are available for this feature:
BLAST of FC931855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CDPK4_PLABA2.546e-1131.37Calcium-dependent protein kinase 4 OS=Plasmodium b... [more]
CCAMK_PEA9.675e-1130.77Calcium and calcium/calmodulin-dependent serine/th... [more]

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Properties
Property NameValue
Genbank descriptionC34201H08EF PostHarveN Citrus clementina cDNA clone C34201H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931855 ID=FC931855; Name=FC931855; organism=Citrus clementina; type=EST; length=421bp
AATATCCGACAGCGCAAAAGACCTTATTCGGAAGATGTTATGCTCTCAAC
CGTCAGAACGCCTGACTGCTCATGAAGTTTTATGTCATCCCTGGATCTGT
GAAAATGGAGTTGCTCCTGATAGGTCCCTTGATCCAGCTGTACTTTCTCG
TCTCAAACAATTCTCTGCAATGAATAAATTGAAAAAGATGGCTTTACGGG
TTATAGCTGAAAGCCTTTCTGAAGAGGAGATTGCTGGTTTAAAGGAAATG
TTCAAGGCCATGGATACTGACAATAGTGGTGCAATTACATTTGATGAACT
CAAAGCTGGTTTACGAAGATATGGCTCTACCTTGAAGGATACAGAGATAC
GTGATCTTATGGATGCGGCTGATGTGGACAATAGTGGAACTATTGATTAT
GGAGAATTTATAGCTGCNACT
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