FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 64/186 (34.41%), Postives = 103/186 (55.38%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPGRFDR++ + +P + GR++IL+VH+R K +A DVD+  +A  T G  GA+L N++  AAI   R    EI+ D++  A +    G  ++K    S E  R VA +EA  A+V    P+   +  ++I PR G+  G         + + G+ SR  L + + V L  R A+E+  G+  ++T
Sbjct:  387 LLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGP-EKKNAVVSEEKRRLVAYHEAGHALVGALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTT 570          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.445e-20
Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPG+FDR++ + +P + GR+ IL+VH+R K +A DVD+  +A  T G  GA+L N++  AAI   R    EI+ D++  A +    G  ++K    S E  + VA +EA  A+V    P+   +  ++I PR G+  G         + + G+ SR  L + + V L  R A+E+  GE  ++T
Sbjct:  385 LLRPGKFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGP-EKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEDNVTT 568          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 71/203 (34.98%), Postives = 108/203 (53.20%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L RPGRFDR I +P P + GR EIL+++ + KPM++DVD  A+A  T G  GA+LAN+V +AAI    +G  +++++ L  A      G  +RK    S ++ +  A +E+  A+VA+N      I   TI PR G  LG V     +    E  +S++ LL  + V +  R A+EL  G   ++T  +     A   A+  V
Sbjct:  513 LTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSSEQLEFAKDRIVMG-TERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATIMPR-GSALGMVTQLPSN---DETSVSKRQLLARLDVCMGGRVAEELIFGLDHITTGASSDLSQATELAQYMV 710          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 64/186 (34.41%), Postives = 102/186 (54.84%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPGRFDR++ + +P + GR++IL+VH+R K +  DVD+  VA  T G  GA+L N++  AAI   R    EI+ D++  A +    G  ++K    S E  R VA +EA  A+V    P+   +  ++I PR G+  G         + + G+ SR  L + + V L  R A+E+  G+  ++T
Sbjct:  417 LLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIAGP-EKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTT 600          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 62/186 (33.33%), Postives = 102/186 (54.84%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPGRFDR++ + +P + GR++IL+VH+R K +  DVD+  +A  T G  GA+L N++  AAI   R    EI+ D++  A +    G  ++K    S E  + VA +EA  A+V    P+   +  ++I PR G+  G         + + G+ SR  L + + V L  R A+E+  G+  ++T
Sbjct:  408 LLRPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEAAILAARRELKEISKDEISDALERIIAGP-EKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGERVAEEVIFGQDNVTT 591          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 63/178 (35.39%), Postives = 99/178 (55.62%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYV--RMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADEL 526
            L+RPGRFDRK+ + +P + GR  ILKVHA+ KP+A+DVD   VA  T G VGA+L N++  AA+   R  ++ I   D+ +A      G   + +   +  R+ VA +EA   +V +   + + +  VTI PR GR  GY+    K D M     +LS++ + + +   +  R A+E+
Sbjct:  342 LLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPR-GRAGGYMIALPKEDQM-----LLSKEDMKEQLAGLMGGRVAEEI 513          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 63/178 (35.39%), Postives = 99/178 (55.62%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYV--RMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADEL 526
            L+RPGRFDRK+ + +P + GR  ILKVHA+ KP+A+DVD   VA  T G VGA+L N++  AA+   R  ++ I   D+ +A      G   + +   +  R+ VA +EA   +V +   + + +  VTI PR GR  GY+    K D M     +LS++ + + +   +  R A+E+
Sbjct:  342 LLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPR-GRAGGYMIALPKEDQM-----LLSKEDMKEQLAGLMGGRVAEEI 513          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 68/181 (37.57%), Postives = 99/181 (54.70%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 538
            L+RPGRFDR+I + +P + GR E+LKVHAR KP+ DDV+   +A+ T G  GA+L N++  AA+   R   T+I+   + +A      G   +K R  SP+  + VA +EA   VV V   +   +  VTI PR G   GY  M     ++    +++  LLD I   L  R A+E+  GE
Sbjct:  321 LLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIAGPA-KKSRVISPKEKKIVAWHEAGHTVVGVKLENADMVHKVTIVPR-GMAGGYAVMLPKEDRY---FMTQPELLDKIIGLLGGRVAEEVTFGE 496          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 64/181 (35.36%), Postives = 97/181 (53.59%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 538
            L+RPGRFDR++ + +P L GR  IL++HA+   +A +VD  AVA +T G  GA+LAN+V  AA+  +R GR ++   DL +A +    G L +K R    E  R +A +E   A+          +  +TI PR    LGY        +    +++ Q LL  + V L+ RAA+ +  GE
Sbjct:  295 LLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETDLDEAVEKTMIG-LQKKSRVIREEERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYT---FHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAFGE 471          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 62/186 (33.33%), Postives = 103/186 (55.38%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPGRFDR++ + +P + GR++IL+VH+R K +A DVD+  +A  T G  G +L N++  AAI   R    EI+ D++  A +    G  ++K    S E  + VA +EA  A+V    P+   +  ++I PR G+  G         + + G+ SR  L + + V L  R A+E++ G+  ++T
Sbjct:  408 LLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGVDLQNLMNEAAILAARRDLKEISKDEIADALERIIAGP-EKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVF-GQDNVTT 590          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FTSH1_ORYSJ8.403e-2134.41Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_CAPAN2.445e-2033.87Cell division protease ftsH homolog, chloroplastic... [more]
FTSHB_ARATH3.193e-2034.98Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH1_ARATH3.193e-2034.41Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_TOBAC5.447e-2033.33Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_STRR65.447e-2035.39Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN5.447e-2035.39Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_BACPF5.447e-2037.57Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH_TREPA1.585e-1935.36Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_MEDSA2.070e-1933.33Cell division protease ftsH homolog, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
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