FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 59/177 (33.33%), Postives = 97/177 (54.80%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADEL 526
            L+RPGRFDR++ + +P L GR++IL+++A+K  +  +V+   +A+ T G  GA+LAN+V  AA+   R+ +  +T  D  +A +    G L++K R  S +  + VA +E   A+V    P    +  ++I PR    LGY        +F   +L+   L D I   L  RAA+E+
Sbjct:  331 LLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADFREAIERVVAG-LEKKSRVLSDKEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRF---LLNESELRDQIATLLGGRAAEEI 503          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 69/214 (32.24%), Postives = 105/214 (49.07%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR+I +  P +  R+ ILKVHA +K +   V   AVA  T G  GA+LAN++  AAI  +R G  +IT  ++  A      GM        +  R +A +E   A+ A   P+   ++ VT+ PR  +  G      D+   +  +LS+  L+  I V L  RAA+E   G  +++T  +       + AR  V        FG+S+
Sbjct:  309 LLRPGRFDRQIMVSMPDVKSRIAILKVHANQKKLHPQVSLEAVARRTAGFAGADLANLLNEAAILAVRRGLKQITWKEIDDAIDRVIAGMEGTPIMDGKIKRLIAYHETGHALTATLLPNHPPVQKVTLIPRR-QAKGLTWFMQDN---ERDLLSKSQLMSMIMVALGGRAAEEAVFGNAEVTTGASNDLQQVTNLARQMV------TRFGMSS 512          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 71/209 (33.97%), Postives = 107/209 (51.20%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRK-ERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSD 622
            L+RPGRFDR+I +  P + GR +ILKVH +K      V    +A  T G  GAELAN+V  AA+   R G+ E+   D+ +A      G++ R    S +  R  A +E   A+V +  P    I   TI PR G  LG V+   +  ++ +   +R+ +   I V +A R A+E+  G+ ++++  A     A + AR  V   GLSD
Sbjct:  310 LLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPR-GNALGMVQRLPETDEYSQ---NREQMESSIAVYMAGRVAEEIIFGKNKVTSGAASDIKGATNIARAMVTKAGLSD 514          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 78/230 (33.91%), Postives = 111/230 (48.26%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE----------ERGMLDRKERSPET---------WRQV---AINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L RPGRFDR I +P P + GR EIL+++ + KP++ DVD  A+A  T G  GA+LAN+V +AAI    +G       D L AAQ+E          ER  +   + S +           R++   A +E+  A+VA+N      I   TI PR G  LG V          E  +S++ LL  + V +  R A+EL  GE  ++T        A   A+  V   G+SD
Sbjct:  479 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVSSDVDVNAIARSTPGFNGADLANLVNIAAIKAAVEGA------DKLAAAQLEFAKDRIIMGTERKSMFISDESKKACLFKLLYFILRELILTAYHESGHAIVALNTQGAHPIHKATILPR-GSALGMVTQLPSQ---DETSISKKQLLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVSNCGMSD 698          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 70/209 (33.49%), Postives = 106/209 (50.72%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRK-ERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSD 622
            L+RPGRFDR+I +  P + GR +ILKVH +K      V    +A  T G  GAELAN+V  AA+   R G+ E+   D+ +A      G++ R    S +  R  A +E   A+V +  P    I   TI PR G  LG V+   +  ++ +   +R+ +   I V +A R A+E+  G  ++++  +     A + AR  V   GLSD
Sbjct:  310 LLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPR-GNALGMVQRLPETDEYSQ---NREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSD 514          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 66/214 (30.84%), Postives = 105/214 (49.07%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR++ +  P   GR EIL+VHAR K +A +V   ++A  T G  GA+LAN++  AAI   R  ++ IT  ++  A      GM        ++ R +A +E   A+V     D   ++ VT+ PR G+  G      +    ++G+ ++  L+  I   +  RAA+E   G+ +++T            AR  V        FG+SN
Sbjct:  327 LMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDPVQKVTLIPR-GQAQGLTWFTPNE---EQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMV------TRFGMSN 530          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.903e-18
Identity = 70/209 (33.49%), Postives = 105/209 (50.24%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRK-ERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSD 622
            L+RPGRFDR+I +  P + GR +ILKVH +K      V    +A  T G  GAELAN+V  AA+   R G+ E+   D+ +A      G+  R    S +  R  A +E   A+V +  P    I   TI PR G  LG V+   +  ++ +   +R+ +   I V +A R A+E+  G  ++++  +     A + AR  V   GLSD
Sbjct:  310 LLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPR-GNALGMVQRLPETDEYSQ---NREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSD 514          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR+I +  P L GR  +L+VH++ KPMA D D   +A  T GM GA+LAN++  AA+   R+  T IT   L +A      G   RK R  S +  +  A +E    + A   PD++ I  VTI  R GR  G+     +  K   G+ +R  ++  +   +  RAA+EL   E     +     + A   AR+ V        FG+S+
Sbjct:  318 LLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVD-RVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILAR-GRTGGHAVAVPEEDK---GLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAV--SDIEQATKIARSMV------TEFGMSS 520          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR+I +  P L GR  +L+VH++ KPMA D D   +A  T GM GA+LAN++  AA+   R+  T IT   L +A      G   RK R  S +  +  A +E    + A   PD++ I  VTI  R GR  G+     +  K   G+ +R  ++  +   +  RAA+EL   E     +     + A   AR+ V        FG+S+
Sbjct:  318 LLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVD-RVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILAR-GRTGGHAVAVPEEDK---GLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAV--SDIEQATKIARSMV------TEFGMSS 520          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR+I +  P L GR  +L+VH++ KPMA D D   +A  T GM GA+LAN++  AA+   R+  T IT   L +A      G   RK R  S +  +  A +E    + A   PD++ I  VTI  R GR  G+     +  K   G+ +R  ++  +   +  RAA+EL   E     +     + A   AR+ V        FG+S+
Sbjct:  318 LLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVD-RVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILAR-GRTGGHAVAVPEEDK---GLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAV--SDIEQATKIARSMV------TEFGMSS 520          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FTSH3_SYNY33.530e-1933.33Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_CYAME6.022e-1932.24Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH_RICTY7.865e-1933.97Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH9_ORYSJ1.752e-1833.91Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH_RICPR2.288e-1833.49Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH1_SYNY32.989e-1830.84Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_RICCN3.903e-1833.49Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_MYCTU5.098e-1833.80Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA5.098e-1833.80Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO5.098e-1833.80Cell division protease ftsH homolog OS=Mycobacteri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
back to top