FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 61/185 (32.97%), Postives = 99/185 (53.51%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ------IEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 538
            L+RPGRFDR+I + +P +IGR  +LKVHAR KP+ + V+  ++A  T G  GA+L N++  AA+   R  + +I   D+ +A         ++  ++ +KER+      VA +E    V+ +   +   +  VTI PR G+  GY  M     ++ +   ++  LLD I   L  R A+E+  GE
Sbjct:  316 LLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKERN-----IVAYHEGGHTVIGLVLDEADMVHKVTIVPR-GQAGGYAVMLPREDRYFQ---TKPELLDKIVGLLGGRVAEEIIFGE 491          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 69/209 (33.01%), Postives = 105/209 (50.24%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRK-ERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSD 622
            L+RPGRFDR+I +  P + GR +ILKVH +K      V    +A  T G  GAELAN+V  AA+   R G+ E+   D+ +A      G+  R    S +  R  A +E   A+V +  P    +   TI PR G  LG V+   +  ++ +   +R+ +   I V +A R A+E+  G  ++++  +     A + AR  V   GLSD
Sbjct:  310 LLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPLHKATIIPR-GNALGMVQRLPETDEYSQ---NREQMESSIAVYMAGRVAEEIIFGRNKVTSGASSDIKGATNIARAMVTKAGLSD 514          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR+I +  P L GR  +L+VH++ KP+ADD D   +A  T GM GA+LAN+V  AA+   R+    IT   L +A      G   RK R  S +  +  A +E    + A   PD++ I  VTI  R GR  G+     +  K   G+ +R  ++  +   +  RAA+EL   E     +     + A   AR+ V        FG+S+
Sbjct:  318 LLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAKRTVGMTGADLANVVNEAALLTARENGLVITGPALEEAVD-RVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILAR-GRTGGHAVAVPEEDK---GLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAV--SDIEKATKIARSMV------TEFGMSS 520          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 61/179 (34.08%), Postives = 92/179 (51.40%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAP-RAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 535
            L+RPGRFDR+I +  P + GR+ ILKVH++KK +  DV    +A  T G  GA+LAN++  AAI  +R G+ EIT  ++  +      G+           R +A +EA  AV A   P    ++ VT+ P R  + L +     D       ++S+  +L  I   LA RA +E+  G
Sbjct:  326 LLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVRRGKVEITMKEIEDSIDKIIAGLEGSPLADSRIKRLIAYHEAGHAVAATFLPHHDPVQKVTLIPRRQAKGLTWFLPNDDQF-----LVSKSQILSKIIAALAGRAMEEIVFG 499          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 68/191 (35.60%), Postives = 98/191 (51.31%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAVNFPDL----KNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L RPGRFDR + +  P  IGR  IL+VH  KK  P+ DDV+  ++ASMT G  GA+LAN+V  AA+   R  +T +   D +QA +    G+  +  R     +  VA +EA  AVV     +L      +E ++I PR G  LG+    +        +L    LL  +   L  RAA+E+    G++ST
Sbjct:  481 LRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDFIQAVERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFT--YIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEV-VYSGRIST 668          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 76/214 (35.51%), Postives = 107/214 (50.00%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT---DDLLQ--AAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYV-RMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L+RPGRFDR++ +  P + GR EILKVH   K    DV    +A  T G  GA+LAN++  AAI   R GRT I++   DD +    A +E   M D K +S      VA +E   A+     P    ++ VT+ PR G+  G    + MD       ++SRQ L   I   L  RAA+E+  GE +++T  A         A+  V+  G+SD
Sbjct:  369 LLRPGRFDRQVSVDVPDVRGRTEILKVHGSNKKFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDGKSKS-----LVAYHEVGHAICGTLTPGHDPVQKVTLIPR-GQARGLTWFIPMD----DPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSD 572          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 66/205 (32.20%), Postives = 105/205 (51.22%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ----VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFD ++ +P+P + GR EILK +  K      VD   +A  T G  GAEL N+V  AA+    DG+  +T  +L  +   +++ ++  + RS E   +     A +E+  A++A    D   I   TI PR G  LG+V +  ++ ++ E   +R  LL  + V +  R A+EL  G   ++T  +   DNA   A+  V
Sbjct:  492 LIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS---KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPR-GPTLGHVSLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMV 689          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 54/141 (38.30%), Postives = 78/141 (55.32%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYV 421
            L+RPGRFDRK+ +  P + GR  +LKVHA+ KP+A DVD   VA+ T G VGA+L N++  AA+   R  + EI   D+ +       G   +        R+ VA +EA  A+V +   +   +  VT+ PR GR  GY+
Sbjct:  349 LLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNVATQTPGYVGADLENVLNEAALVAARQNKKEINAADIDEGMDRAMAGPAKKDRIQSMREREIVAYHEAGHAIVGLVLENGSTVRKVTVVPR-GRIGGYM 488          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 66/205 (32.20%), Postives = 105/205 (51.22%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ----VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFD ++ +P+P + GR EILK +  K      VD   +A  T G  GAEL N+V  AA+    DG+  +T  +L  +   +++ ++  + RS E   +     A +E+  A++A    D   I   TI PR G  LG+V +  ++ ++ E   +R  LL  + V +  R A+EL  G   ++T  +   DNA   A+  V
Sbjct:  434 LIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS---KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPR-GPTLGHVSLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMV 631          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 66/191 (34.55%), Postives = 97/191 (50.79%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAVNFPDL----KNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L RPGRFDR + +  P  +GR  ILKVH  KK  P+ DDV+  ++ASMT G  GA+LAN+V  AA+   R  +  +   D + A +    G+  +  R   + +  VA +EA  AVV      L      +E ++I PR+G  LG+  +   H      +L    L   +   L  RAA+E+    G++ST
Sbjct:  485 LRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDFIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHE--DRYLLFIDELHGRLVTLLGGRAAEEV-VYSGRIST 672          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FTSH_BACSU5.098e-1832.97Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_RICFE6.658e-1833.01Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_MYCLE6.658e-1833.80Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_CYACA6.658e-1834.08Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH7_ARATH6.658e-1835.60Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH2_ORYSJ6.658e-1835.51Cell division protease ftsH homolog 2, chloroplast... [more]
YMEL1_HUMAN1.136e-1732.20ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
FTSH_LACLA1.136e-1738.30Cell division protease ftsH homolog OS=Lactococcus... [more]
YMEL1_MOUSE1.483e-1732.20ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
FTSH9_ARATH1.483e-1734.55Cell division protease ftsH homolog 9, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
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