FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 65/214 (30.37%), Postives = 102/214 (47.66%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR++ +  P + GR+EIL VHAR K +   +    +A  T G  GA+LAN++  AAI   R  + +IT  ++  +      GM  +     +T R +A +E   A++         ++ VT+ PR G+  G            + ++SR  +L  I   L  RAA+E+  G  +++T          S AR  V        FG+SN
Sbjct:  328 LLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEIDASIDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHHDPVQKVTLVPR-GQAKGLTWFTPSE---DQSLISRSQILARIMGALGGRAAEEVVFGLPEVTTGAGNDLQQVTSMARQMV------TRFGMSN 531          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 68/212 (32.08%), Postives = 105/212 (49.53%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERS----PETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L RPGRFDR I +P P + GR+ IL  H R  P+  DVD   +A  T G  GA+LAN++  AA+   ++  T ++  DL  +   ++R ++  + +S    PE     A +E   A+VA+   +       TI PR G  LG   M +      +   +R+  L  + V +  RAA+EL  G+ ++++      D A   AR  V   G+SD
Sbjct:  423 LTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWS---KDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPR-GSSLG---MTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSD 627          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 69/208 (33.17%), Postives = 103/208 (49.52%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG-------MLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L RPGRFDR++ +  P + GR +ILKVH RK  +A DVD + +A  T G  GA+LAN+V  AA+   R  +  +T  +  +A      G       M D+++ S       A +EA  A+V    P+   +  VTI PR GR LG      +  +     +S++ L   ++   A R A++L  GE  +ST  +     A + AR  V
Sbjct:   52 LTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTDKQKES------TAYHEAGHAIVGYLVPEHDPVHKVTIIPR-GRALGVTFFLPEGDQIS---ISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIARNMV 249          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 69/208 (33.17%), Postives = 103/208 (49.52%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG-------MLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L RPGRFDR++ +  P + GR +ILKVH RK  +A DVD + +A  T G  GA+LAN+V  AA+   R  +  +T  +  +A      G       M D+++ S       A +EA  A+V    P+   +  VTI PR GR LG      +  +     +S++ L   ++   A R A++L  GE  +ST  +     A + AR  V
Sbjct:  306 LTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTDKQKES------TAYHEAGHAIVGYLVPEHDPVHKVTIIPR-GRALGVTFFLPEGDQIS---ISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNIARNMV 503          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 66/205 (32.20%), Postives = 104/205 (50.73%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ----VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFD ++ +P+P + GR EILK +  K      VD   +A  T G  GAEL N+V  AA+    DG+  +T  +L  +   +++ ++  + RS E   +     A +E+  A++A    D   I   TI PR G  LG+V +  ++ ++ E    R  LL  + V +  R A+EL  G   ++T  +   DNA   A+  V
Sbjct:  434 LIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFS---KDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPR-GPTLGHVSLLPENDRWNE---IRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMV 631          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 68/209 (32.54%), Postives = 104/209 (49.76%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRA-GRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSD 622
            L+RPGRFDR++ +  P + GR EILKVH+R K +  DV    +A  T G  GA+LAN++  AAI   R G+ +IT  ++  +      GM   K    ++   VA +E   A+ A        ++ VT+ PR   R L +     D       ++S+Q L   I   L  RAA+++  GE +++T  A         AR  V + G+S+
Sbjct:  379 LLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEIDDSIDRIVAGMEGTKMIDGKSKAIVAYHEVGHAICATLTEGHDPVQKVTLVPRGQARGLTWFLPGED-----PTLVSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMSE 582          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 64/205 (31.22%), Postives = 108/205 (52.68%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR+I I +P + GR +I KVH +    AD++D +A  +A +T G  GA++ N+    A+   R    E+      QA +    G L++K R  SPE    VA +EA  AV       +  +  V+I PRA + LGY      ++   + ++SR  +LD + + LA R ++E++ G  ++++  ++        A+ +V
Sbjct:  452 LLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIERVTAG-LEKKSRVLSPEEKNTVAHHEAGHAVAGWFMEYVDPLLKVSIIPRA-QALGYA----SYLPKDQYLMSRGQILDQMGMALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYV 650          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 68/208 (32.69%), Postives = 106/208 (50.96%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERS---PETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEG---MLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P + GR +ILKVH R+ P+A D+D   +A  T G  GA+LAN+V  AA+   R  +  ++   +++  + +++ M+  + RS    E  ++  A +EA  A++    P+   +  VTI PR GR LG            EG     SRQ L   I+     R A+E+  G   +ST  +     A + AR  V
Sbjct:  307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS---MVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVT------FFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMV 504          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 68/208 (32.69%), Postives = 106/208 (50.96%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERS---PETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEG---MLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P + GR +ILKVH R+ P+A D+D   +A  T G  GA+LAN+V  AA+   R  +  ++   +++  + +++ M+  + RS    E  ++  A +EA  A++    P+   +  VTI PR GR LG            EG     SRQ L   I+     R A+E+  G   +ST  +     A + AR  V
Sbjct:  307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS---MVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVT------FFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMV 504          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 68/208 (32.69%), Postives = 106/208 (50.96%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERS---PETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEG---MLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P + GR +ILKVH R+ P+A D+D   +A  T G  GA+LAN+V  AA+   R  +  ++   +++  + +++ M+  + RS    E  ++  A +EA  A++    P+   +  VTI PR GR LG            EG     SRQ L   I+     R A+E+  G   +ST  +     A + AR  V
Sbjct:  307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS---MVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVT------FFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMV 504          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FTSH_GUITH1.937e-1730.37Cell division protease ftsH homolog OS=Guillardia ... [more]
YME1_SCHPO2.530e-1732.08Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSH2_HAEIN2.530e-1733.17Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_HAEIN2.530e-1733.17Cell division protease ftsH homolog 1 OS=Haemophil... [more]
YMEL1_RAT3.304e-1732.20ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
FTSH6_ARATH3.304e-1732.54Cell division protease ftsH homolog 6, chloroplast... [more]
RCA1_SCHPO4.316e-1731.22Mitochondrial respiratory chain complexes assembly... [more]
FTSH_SHIFL4.316e-1732.69Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI4.316e-1732.69Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO574.316e-1732.69Cell division protease ftsH OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
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