FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 68/207 (32.85%), Postives = 104/207 (50.24%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELG--YVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P + GR +ILKVH RK P++ DVD + +A  T G  GA+LAN+V  AA+   R  +  ++   +L+  + +++ M+  + R    S       A +EA   ++    PD      VTI PR GR LG  +   + D +      +SRQ L   I+     R A+E+  G   +ST        A S A+  V
Sbjct:  307 LLRPGRFDRQVIVALPDIRGREQILKVHMRKVPLSKDVDPMIIARGTPGFSGADLANLVNEAALFAARLDKRVVS---MLEFERAKDKMMMGSERRSMVMSDFQKESTAYHEAGHVIIGRLVPDHDPAHKVTIIPR-GRALGVTFFLPESDTLS-----ISRQKLESQISTLYGGRLAEEIIYGAKNVSTGAYNDIKIATSLAKNMV 504          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 68/208 (32.69%), Postives = 106/208 (50.96%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERS---PETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEG---MLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P + GR +ILKVH R+ P+A D+D   +A  T G  GA+LAN+V  AA+   R  +  ++   +++  + +++ M+  + RS    E  ++  A +EA  A++    P+   +  VTI PR GR LG            EG     SRQ L   I+     R A+E+  G   +ST  +     A + AR  V
Sbjct:  307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS---MVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVT------FFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMV 504          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 68/208 (32.69%), Postives = 106/208 (50.96%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERS---PETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEG---MLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P + GR +ILKVH R+ P+A D+D   +A  T G  GA+LAN+V  AA+   R  +  ++   +++  + +++ M+  + RS    E  ++  A +EA  A++    P+   +  VTI PR GR LG            EG     SRQ L   I+     R A+E+  G   +ST  +     A + AR  V
Sbjct:  307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS---MVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVT------FFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMV 504          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 68/222 (30.63%), Postives = 109/222 (49.10%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSP--ETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDXHFGLSNFWVAD 658
            L+RPGRFD ++ +PKP L GR++I   +  K   +  +D   +A  + G  GA++ N+V  AA+    D   E+T   L +A      G      R P  E  R  A +EA   +V++   D   +  VTI PR G+ LG+  M  +   ++   L++  +L  + V +  R A+EL  G+ +++T  A+    A   A   V + G+SD   GL +F   D
Sbjct:  354 LLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQAALKAATDNAVEVTMAYLDEARDRVLMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTIIPR-GQSLGHTAMLPEKDSYQ---LTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSD-KVGLRDFTAQD 570          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQS-LLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR I I  P +  R  ILKVHA  K ++  +  L VA  T G  GA+L N++  A +  +RD RT I  +D+ +A      G   +K R  S E  + VA +EA  A+V ++      ++ +TI PR G+  GY    +   K  +  L R+S LL  I   +  RAA+E   G  +++T  +     A + AR  V
Sbjct:  386 LLRPGRFDRHIQINLPDIKEREGILKVHAENKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRVIAGPA-KKSRVISDEDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPR-GQAGGYT---LSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMV 584          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 68/208 (32.69%), Postives = 101/208 (48.56%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ-----IEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELG--YVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR+IF+  P + GR +I++VH +K P+ ++VD + +A  T G  GA+LAN+V  AA+   R+ R  +   D   A        E R M+  +++   T    A +EA   +V    P+      VTI PR GR LG  +   K D +   +  L  Q     I+     R A+E+  G   +ST        A + AR  V
Sbjct:  307 LLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLGNNVDPMIIARGTPGFSGADLANLVNEAALFAARNNRDVVMMSDFESAKDKITMGSERRSMVMTEKQKEST----AYHEAGHVIVGRLVPEHDPAHKVTIIPR-GRALGVTFFLPKDDVLSINKNKLESQ-----ISTLYGGRLAEEIIYGVNNVSTGAHNDIKVATNLARNMV 504          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 71/217 (32.72%), Postives = 104/217 (47.93%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT-------EITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELG--YVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSD 622
            L+RPGRFDR++ +  P + GR +ILKVH RK P+++DVD + +A  T G  GA+LAN+V  AA+   R           E   D ++  ++     M D ++ S       A +EA   ++    PD      VTI PR G+ LG  +   + D +      +SRQ L   I+     R A+E+  G   +ST        A + AR  V   G SD
Sbjct:  307 LLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLSEDVDPMIIARGTPGFSGADLANLVNEAALFAARFNNRVVSMIHFEKAKDKIMMGSERRSMVMSDFQKES------TAYHEAGHVIIGRLVPDHDPAHKVTIIPR-GQALGITFFLPESDILS-----ISRQKLESQISTLYGGRLAEEIIYGSQNVSTGAFNDIKVATNLARNMVTQWGFSD 511          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 73/214 (34.11%), Postives = 104/214 (48.60%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT---DDLLQ--AAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRA-GRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L+RPGRFDR++ +  P + GR +ILKVHA  K   +DV    +A  T G  GA+LAN++  AAI   R  RT I++   DD +    A +E   M D K +S      VA +E   AV     P    ++ VT+ PR   R L +     D       ++S+Q L   I   L  RAA+E+  G+ +++T            AR  V   G+SD
Sbjct:  382 LLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGTVMTDGKSKS-----LVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDD-----PTLISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMSD 585          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.640e-16
Identity = 62/207 (29.95%), Postives = 101/207 (48.79%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL-----LQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRA-GRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P   GR+ IL+VHA+ K M   V    +A  T G  GA+LAN++  AAI   R  ++ +T  ++        A +E   ++D K +     R +A +E   A++         ++ VT+ PR   R L +     D     + ++SR  +L  I   L  RAA+E+  G+ +++T  +       S AR  V
Sbjct:  328 LLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEIDTSIDRVVAGLEGTPLIDSKSK-----RLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDD-----QSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMV 524          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 56/184 (30.43%), Postives = 94/184 (51.09%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPGRFDR++ +  P + GR  IL +HA+ K + ++V   A+A  T G  GA+LAN++  AAI   R  +  IT  ++  A      GM        ++ R +A +E   A++    P    +E VT+ PR G+  G      D     + +++R  ++  I   L  R A+E+  G+ +++T
Sbjct:  366 LLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEAITMAEVNDAIDRVVAGMEGTPLVDSKSKRLIAYHEVGHALIGTLCPGHDPVEKVTLIPR-GQAQGLTWFTPDE---DQSLMTRNQMIARIAGLLGGRVAEEVIFGDDEVTT 545          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FTSH_BUCAI4.316e-1732.85Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_SALTY5.636e-1732.69Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI5.636e-1732.69Cell division protease ftsH OS=Salmonella typhi GN... [more]
YME1_CAEEL9.614e-1730.63Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]
FTSH_MYCGE1.256e-1634.80Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_BUCBP1.256e-1632.69Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCAP1.256e-1632.72Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH2_ARATH1.256e-1634.11Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH_PORPU1.640e-1629.95Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH2_SYNY32.142e-1630.43Cell division protease ftsH homolog 2 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
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