FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 60/202 (29.70%), Postives = 97/202 (48.02%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRA-GRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR++ +  P   GR+ IL+VHA+ K M   V    +A  T G  GA+LAN++  AAI   R  +  +T  ++  +      GM        ++ R +A +E   A++         ++ VT+ PR   R L +     D     + ++SR  +L  I   L  RAA+E+  G+ +++T  +       S AR  V
Sbjct:  328 LLRPGRFDRQVSVDVPDFKGRLAILEVHAKNKKMEPKVSLETIARRTPGFSGADLANLLNEAAILTARRRKNAMTMSEIDTSIDRVVAGMEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDD-----QSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMV 524          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRK 283
            ++RPGRFDR I +P P L GR+EIL +H RK  MA DVD  A+A +T+G  GA+L  +V  A  N +R G   IT DD+++A + + +  LD++
Sbjct:  295 VLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMIKAVE-KVKAALDKR 387          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 67/203 (33.00%), Postives = 103/203 (50.74%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQS-LLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR I I  P +  R  IL+VHA+ K ++  +  L VA  T G  GA+L N++  A +  +RD RT I  +D+ +A      G   +     +  R+ VA +EA  A+V ++      ++ +TI PR G+  GY    +   K  +  L R+S LL  I   +  RAA+E   G  +++T  +     A + AR  V
Sbjct:  383 LLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKKSRVVSDADRKLVAYHEAGHALVGLHVHSNDEVQKITIIPR-GQAGGYT---LSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGPLEITTGASSDFYKATNIARAMV 581          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 65/190 (34.21%), Postives = 96/190 (50.53%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT---DDLLQ--AAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRA-GRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPGRFDR++ +  P + GR +ILKVH+  K     V    +A  T G  GA+LAN++  AAI   R G+T I++   DD +    A +E   M D K +S      VA +E   A+     P    ++ VT+ PR   R L +     D       ++S+Q L   I   L  RAA+E+  GE +++T
Sbjct:  375 LLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKS-----LVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDD-----PTLISKQQLFARIVGGLGGRAAEEVIFGESEVTT 554          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 62/203 (30.54%), Postives = 103/203 (50.74%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            L+RPGRFDR I +  P +  R EILK+H++ K ++ ++ +  +A  T G  GA+L N++  A++  +R+ +T++     +  A         +K R  S E  + VA +EA  AVV +       ++ +TI PR G   GY  M  +  K+     S++ LL  I   +  RAA+ +  G+  +ST  ++    A   AR  V
Sbjct:  367 LLRPGRFDRIITVGLPDIKEREEILKLHSKGKRLSKEIKFDKIAKRTPGYSGAQLENVINEASLLSVRE-KTDVIISTQIDEAIDRVMAGPAKKSRVISQEELKAVAYHEAGHAVVGLKVKGGNKVQKITIIPR-GNAGGYNLMTPEEEKYN---ASKKELLATIASYMGGRAAEMIIYGKENISTGASDDISRATKIARKMV 564          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 68/213 (31.92%), Postives = 104/213 (48.83%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ-----IEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L+RPGRFDR+I +  P + GR +IL+VH +K   +  +    +A  T G  GAELAN+V  A +   R  + E+   DL +A       +E R M+     S E  +  A +E   A+V +       I   TI PR GR LG V    ++ +F    + R  +   I V +A R A+E+  G+ ++++  +     A   A+  V   GLSD
Sbjct:  310 LLRPGRFDRQITVSNPDIDGREKILQVHLKKVKYSTKIVPRIIARGTPGFSGAELANLVNEATLIAARRNKKEVEMHDLEEAKDKVMMGVERRSMI----MSDEQKKLTAYHEGGHALVGLYCLASDPIHKATIIPR-GRALGMVMRLPENDRFS---MPRDKMEADIAVAMAGRVAEEIIFGKEKVTSGASSDIKMATRMAKAMVTDWGLSD 514          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 72/215 (33.49%), Postives = 101/215 (46.98%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT---DDLLQ--AAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKE--GMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L+RPGRFDR++ +  P + GR EIL VH   K +   V    VA  T G  GA+LAN++  AAI   R G+  IT    DD +    A +E   M D K +       VA +E   AV A        ++ VT+ PR     G  R     +  +E   ++SRQ +   I   L  RAA+E+  GE +++T  A         AR  V   G+S+
Sbjct:  377 LLRPGRFDRRVSVGLPDVRGREEILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGRRGKDRITVSEIDDSIDRIVAGLEGTSMTDGKSK-----MLVAYHEIGHAVCATLTAGHDEVQKVTLIPR-----GQARGLTWFLPGEEDPALVSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGMSE 581          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ-IEERGMLDRKE 286
            ++RPGRFDR I +P P   GR+EILK+H RK  +A+DV+   +A MT+G VGAEL  I   A +N +R+ R  +T DD  +A + I E+  +  KE
Sbjct:  326 ILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVKVKE 421          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 64/184 (34.78%), Postives = 98/184 (53.26%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHAR--KKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 535
            L+RPGRFDR+IFI  P + GR  I KVH R  K   A + D LA  +AS+T G  GA++AN+   AA+   R     I      QA +    G L++K +   PE  + VA +EA  AV          +  V+I PR G+ LGY +    ++  ++ + +++ LLD + + L  R ++E++ G
Sbjct:  462 LLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIE-RVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPR-GKGLGYAQ----YLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFG 639          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHAR--KKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 535
            L+RPGRFDR+IFI  P + GR  I KVH R  K     + D LA  +AS+T G  GA++AN+   AA+   R     I      QA +    G L++K +   PE  + VA +EA  AV          +  V+I PR G+ LGY +    ++  ++ + +++ LLD + + L  R ++E++ G
Sbjct:  463 LLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIE-RVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPR-GKGLGYAQ----YLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFG 640          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FSTH_PORYE2.797e-1629.70Cell division protease ftsH homolog OS=Porphyra ye... [more]
PSMR_AERPE8.139e-1645.74Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
FTSH_MYCPN8.139e-1633.00Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH8_ARATH8.139e-1634.21Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH_MYCPU1.063e-1530.54Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_RICBR1.813e-1531.92Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH6_ORYSJ5.276e-1533.49Cell division protease ftsH homolog 6, chloroplast... [more]
PSMR_METJA6.890e-1545.83Proteasome-activating nucleotidase OS=Methanocaldo... [more]
AFG32_MOUSE6.890e-1534.78AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN1.535e-1434.24AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
back to top