FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHAR--KKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 535
            L+RPGRFDR+IFI  P + GR  I KVH R  K     + + LA  +AS+T G  GA++AN+   AA+   R     I      QA +    G L++K +   PE  + VA +EA  AV          +  V+I PR G+ LGY +    ++  ++ + +R+ LLD + + L  R ++E++ G
Sbjct:  464 LMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIE-RVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPR-GKGLGYAQ----YLPREQYLYTREQLLDRMCMTLGGRVSEEIFFG 641          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 253
            L+RPGR DRKI IP P  +GRMEILK+H  K     ++DY A+  +TDG  GA+L N+V  A    +++ R  +   DL+ AA+
Sbjct:  288 LLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAAR 371          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 55/182 (30.22%), Postives = 98/182 (53.85%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 535
            L+RPGRFDR+I I KP + GR +I +++ +K  + ++  + +  +A++T G  GA++AN+   AA+   R   T+IT     ++A     G L++K +  S    R VA +E+  AV        + +  VTI PR    LG+ +    ++  +  +++++ L D   + L  RAA+E+  G
Sbjct:  491 LLRPGRFDRQITIDKPDIKGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQITMQH-FESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQ----YVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIG 667          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 60/179 (33.52%), Postives = 90/179 (50.28%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYL--AVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADEL 526
            L+RPGRFDR I I KP L GR  I  VH     +A ++  L   +A++T G  GA++AN+   AA+   R     +  +   QA +    G ++RK +  SPE  + VA +EA  AV          +  V+I PR    LGY +    ++     +L+ Q L D +T+ L  R ++EL
Sbjct:  504 LLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIE-RVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQ----YLPGDIFLLTEQQLKDRMTMSLGGRVSEEL 677          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 56/183 (30.60%), Postives = 97/183 (53.01%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 538
            L+RPGRFDR+I I KP + GR +I K++ +K  +  +  Y +  +A++T G  GA++AN+   AA+   R     +T     ++A     G L++K R  S    R VA +E+  AVV       + +  VTI PR    LG+ +    ++  +  +++++ L D   + L  RAA+++  G+
Sbjct:  477 LLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAH-FESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQ----YVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGK 654          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 57/201 (28.36%), Postives = 97/201 (48.26%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDR-KERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAAR 595
            L+RPGR DR +FI  P L  R EI + H +   +     + +  +A +T G  GA++ANI   AA++  R+G T + T +   A +    G   + K  S E  R VA +E+  A+V       + +  V+IAPR    LG+ +M    +   + + +++ L + + + L  RAA+ +       S + +   D+ R   R
Sbjct:  465 LMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEEQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQM----LPRDQYLFTKEQLFERMCMALGGRAAEAI-----SFSRVTSGAQDDLRKVTR 656          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ-VAINEAAMAV----VAVNFPDLKNIEFVTIAPRAGRELGY 418
            L RPGRFDR + +  P   GR  ILKVH  +K  P+  DVD   +A+MT G  GA+LAN+V  AA+   R  +  +   D + A +    G+  +  +     +  VA +E   AV    VA   P    +E ++I PR+G  LG+
Sbjct:  502 LRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDFICAVERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGF 647          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 55/183 (30.05%), Postives = 96/183 (52.46%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 538
            L+RPGRFDR+I I KP + GR +I +++ +K  +  +  + +  +A++T G  GA++AN+   AA+   R   T IT     ++A     G L++K +  S    R VA +E+  AV        + +  VTI PR    LG+ +    ++     +++++ L D   + L  RAA+E+  G+
Sbjct:  476 LLRPGRFDRQISIDKPDIKGRDQIFRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEGTLITMQH-FESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQ----YVPNDNLLMTKEQLFDMTCMTLGGRAAEEVLIGK 653          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 51/178 (28.65%), Postives = 89/178 (50.00%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDR-KERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADEL 526
            L+RPGR DR +FI  P L  R EI + H +   +     + +  +A +T G  GA++ANI   AA++  R+G T + T +   A +    G   + K  S E  + VA +E+  A+V       + +  V+I PR    LG+ +M    +   + + +++ L + + + L  RA++ L
Sbjct:  465 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQM----LPRDQHLFTKEQLFERMCMALGGRASEAL 638          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHAR----KKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGE 538
            L RPGRFDR+I+I  P + GR  I KVH R       ++ D     +A++T G  GA+++N+   AA+   R     +      QA +    G L++K +   P     VA +EA  AVV         +  V+I PR G+ LGY +    ++  ++ + +R+ L D + + L  R A++L+ G+
Sbjct:  455 LTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIE-RVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPR-GKGLGYAQ----YLPREQFLYTREQLFDRMCMMLGGRVAEQLFFGQ 633          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
AFG32_BOVIN2.005e-1434.24AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
PRS10_SCHPO3.420e-1445.24Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
FTSH8_ORYSJ4.466e-1430.22Cell division protease ftsH homolog 8, mitochondri... [more]
RCA1_YEAST7.618e-1433.52Mitochondrial respiratory chain complexes assembly... [more]
FTSH3_ARATH1.299e-1330.60Cell division protease ftsH homolog 3, mitochondri... [more]
SPG7_MOUSE1.697e-1328.36Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
FTSH7_ORYSJ1.697e-1335.62Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH3_ORYSJ4.938e-1330.05Cell division protease ftsH homolog 3, mitochondri... [more]
SPG7_HUMAN6.449e-1328.65Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
AFG31_MOUSE6.449e-1330.81AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
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