FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPE 298
            L+RPGRFDR I IP P   GR EI K+H R   +A+DVD   +A +T+G  GA++  I   A +  +R+ R  +T DD L+A    +R M  ++E S E
Sbjct:  335 LLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAV---DRVMGKKEEESGE 430          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 61/215 (28.37%), Postives = 102/215 (47.44%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEI-------TTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L RPGRFD+ + +  P + GR +ILK H +K  +AD+VD   +A  T G+ GAELAN+V  AA+   +     +         D +L  A+ +   + D   ++       A +EA  A++A        +   TI PR GR LG +  ++  M   +  ++++     + V +  + A+EL  G+   ++       +A   AR  V   G+SD
Sbjct:  433 LTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMVLTDAARKA------TAFHEAGHAIMAKYTNGATPLYKATILPR-GRALG-ITFQLPEMDKVD--ITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARAMVTQYGMSD 637          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 247
            L+RPGRFDR I +P P   GR+EILKVH RK  +   VD   +A +T+G  GA+L  I   A +  +RD RT +T DD L+A
Sbjct:  294 LLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKA 374          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 247
            L+RPGRFDR I +P P   GR+EILKVH R+  +   VD  A+A MT+G  GA+L  I   A +  +R+ RT +T +D L+A
Sbjct:  296 LLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKA 376          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 247
            L+RPGRFDR I +P P   GR+EILKVH RK  +  +VD   +A +T+G  GA+L  I   A +  +RD RT +T +D L+A
Sbjct:  294 LLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKA 374          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA---AQIEERGMLDRKER 289
            L+RPGRFDR I +P P   GR EI  ++ +K  + D+++   ++ +T+G  GA++ N+   AA   +RDGR ++T +DL++A     ++   M   KER
Sbjct:  290 LLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMNDLVEAINKINVKRNKMESMKER 388          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 253
            L+RPGR DRK+ IP P   GR+EI K+H  K     + D+ A   M+DG  GA++ N    A    +RD R  I  DDL++A +
Sbjct:  337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR 420          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 54/182 (29.67%), Postives = 94/182 (51.65%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLA--VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 535
            L+RPGRFDR+I I KP + GR +I +++ +K  +  +  Y +  +A++T G  GA++AN+   AA+   R     +T      +A     G L++K R  S    R VA +E+  AV        + +  VTI PR    LG+ +    ++  +  +++++ L D   + L  RAA+++  G
Sbjct:  483 LLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAH-FDSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQ----YVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIG 659          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLK 367
            L RPGRFDR+I I  P   GR EIL++H RK P+A+DVD   +A +T+G VGA+L  + + AA++ +R    EI  +     A++ E   + R++          I  +AM  V V  P++K
Sbjct:  335 LRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRRVLPEIDIEAEEIPAEVIENLKVTREDFMEALKN---IEPSAMREVLVEVPNVK 453          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 253
            ++RPGRFDR + +P PG+  R +ILK+H  K  +A D+D+  +A +T+GM GA+L  I   A +  +R  +  +  +D L+A +
Sbjct:  315 ILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVE 398          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PSMR_METKA8.423e-1342.42Proteasome-activating nucleotidase OS=Methanopyrus... [more]
YME1_YEAST1.100e-1228.37Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
PSMR_PYRKO1.437e-1248.78Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_PYRHO1.876e-1247.56Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_THEGJ2.451e-1247.56Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_SULSO2.451e-1236.36Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS10_YEAST2.451e-1241.6726S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
FTSHA_ARATH2.451e-1229.67Cell division protease ftsH homolog 10, mitochondr... [more]
Y1297_ARCFU3.201e-1237.70Cell division cycle protein 48 homolog AF_1297 OS=... [more]
PSMR_METAC5.459e-1238.10Proteasome-activating nucleotidase OS=Methanosarci... [more]

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Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
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