FC931868

Overview
NameFC931868
Unique NameFC931868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6017 contig Ccv1_Contig6017:89..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_NEIM0 (60 kDa chaperonin OS=Neisseria meningitidis serogroup C (strain 053442) GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F    R  M  G++ L++AV +TLGP+GRNVV+D  FG   +  DGVT+A+ IEL D  EN GA +++EVASKTND AGDGTTTA+VLA+ I+  G+  VT+G NP  LKRGIDK V  LVEEL+   +P +   +I  V +ISA +D+ +G
Sbjct:    2 AAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_NEIG2 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain NCCP11945) GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F    R  M  G++ L++AV +TLGP+GRNVV+D  FG   +  DGVT+A+ IEL D  EN GA +++EVASKTND AGDGTTTA+VLA+ I+  G+  VT+G NP  LKRGIDK V  LVEEL+   +P +   +I  V +ISA +D+ +G
Sbjct:    2 AAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_NEIG1 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F    R  M  G++ L++AV +TLGP+GRNVV+D  FG   +  DGVT+A+ IEL D  EN GA +++EVASKTND AGDGTTTA+VLA+ I+  G+  VT+G NP  LKRGIDK V  LVEEL+   +P +   +I  V +ISA +D+ +G
Sbjct:    2 AAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_BURMS (60 kDa chaperonin OS=Burkholderia mallei (strain SAVP1) GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG   V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K  +P     +I  V  ISA +D  IG
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_BURMA (60 kDa chaperonin OS=Burkholderia mallei GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG   V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K  +P     +I  V  ISA +D  IG
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_BURM9 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10229) GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG   V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K  +P     +I  V  ISA +D  IG
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_BURM7 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10247) GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVL+  FG   V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   VEEL+K  +P     +I  V  ISA +D  IG
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_BUCTS (60 kDa chaperonin OS=Buchnera aphidicola subsp. Thelaxes suberi GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 83/158 (52.53%), Postives = 110/158 (69.62%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FG+  +  DGVT+AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRG+DK V   VEEL+    P      I  V TISA +D+ +G
Sbjct:    2 AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPAITKDGVTVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGVDKAVIAAVEELKCLSVPCSDFKAIAQVGTISANSDETVG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_ACIBY (60 kDa chaperonin OS=Acinetobacter baumannii (strain AYE) GN=groL PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 111/158 (70.25%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            SAKD+ F   +R+ M AG++ L+DAV +TLGP+GRNVV+D  FG+  +  DGVT+A+ I L D  EN GA L+REV+SKTND AGDGTTTA+VLA+ I+  G+ SVT+G NP+ LKRGID  V  +VE +    +P +    I+ V +ISA +D  +G
Sbjct:    2 SAKDVKFGDSARSKMIAGVNVLADAVKVTLGPKGRNVVIDRSFGAPHITKDGVTVAKEISLKDKFENMGAQLVREVSSKTNDIAGDGTTTATVLAQAILNEGIKSVTAGMNPMDLKRGIDIAVKTVVENIRSIAKPADDFKAIEQVGSISANSDTTVG 159
[Close]
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH60_ACIBT (60 kDa chaperonin OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=groL PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 82/158 (51.90%), Postives = 111/158 (70.25%), Query Frame = 3 
Query:  210 SAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            SAKD+ F   +R+ M AG++ L+DAV +TLGP+GRNVV+D  FG+  +  DGVT+A+ I L D  EN GA L+REV+SKTND AGDGTTTA+VLA+ I+  G+ SVT+G NP+ LKRGID  V  +VE +    +P +    I+ V +ISA +D  +G
Sbjct:    2 SAKDVKFGDSARSKMIAGVNVLADAVKVTLGPKGRNVVIDRSFGAPHITKDGVTVAKEISLKDKFENMGAQLVREVSSKTNDIAGDGTTTATVLAQAILNEGIKSVTAGMNPMDLKRGIDIAVKTVVENIRSIAKPADDFKAIEQVGSISANSDTTVG 159
The following BLAST results are available for this feature:
BLAST of FC931868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NEIM04.712e-3851.9060 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIG24.712e-3851.9060 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_NEIG14.712e-3851.9060 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_BURMS4.712e-3851.9060 kDa chaperonin OS=Burkholderia mallei (strain S... [more]
CH60_BURMA4.712e-3851.9060 kDa chaperonin OS=Burkholderia mallei GN=groL P... [more]
CH60_BURM94.712e-3851.9060 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BURM74.712e-3851.9060 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BUCTS4.712e-3852.5360 kDa chaperonin OS=Buchnera aphidicola subsp. Th... [more]
CH60_ACIBY4.712e-3851.9060 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBT4.712e-3851.9060 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34202A10EF PostHarveN Citrus clementina cDNA clone C34202A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931868 ID=FC931868; Name=FC931868; organism=Citrus clementina; type=EST; length=700bp
GGCAGCTTCTACTTGTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGC
AGACGCTTCACTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGC
CCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGA
GGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCT
GTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGC
AATGCAGGCCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGG
GTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTGGAAGTTCGAAAGTG
GTTAATGATGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCAT
GGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATG
ACTCTGCTGGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATA
ATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTT
GAAGAGAGGGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGA
AGAGGGTCAGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACC
ATCTCTGCTGGGAATGATGACCTGATTGGGACATGATCGCCGATGCNATT
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