FC931869
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27 Identity = 66/193 (34.20%), Postives = 102/193 (52.85%), Query Frame = 3 Query: 42 GPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 620 G KH K AP W + T+ K S G H + + L L + IR+ LK A N RE K I+ V VDG+V D +P GFMD+I + KTGE +R++ D KGR +++I EE + KLCK+ KGG + HD + + + V D + + + +I + + G ++ TGG++ G +G ++ Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVS 195
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26 Identity = 65/188 (34.57%), Postives = 107/188 (56.91%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRLSAP + + + + K SPGPH ++ +PL+V +R+ L+ A GRE + I+ + VDG VR D +P G DV+++ K + +R+++D KGR+ + E+A+ KL K+ L +GG L D I + K D++ + I +++D +KF+ G ++M TGG + G +G I Sbjct: 5 HQKRLSAPKTYKIPRKVSKWVVKPSPGPHN-KEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRI 188
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25 Identity = 71/190 (37.37%), Postives = 100/190 (52.63%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611 H +R +AP W + K+ G + ++SPGPH L LPL + IR+ LKYA RE + I+ + VK+DG +R D +P G MDV+ + TGE +R+V D K + + I +EEA KL +V+ KGG L HD R + IK DTV D+ I + F G + T G N+G G Sbjct: 3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24 Identity = 64/191 (33.51%), Postives = 98/191 (51.31%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDT---VKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H +R ++P W +++ ++ K SPGPH +PL V +R+ YA RE + I+ + VKVDGKVR D YP G MDVI L E++R++ D RI EA K+C+++ + K G L HD R I + +T V V++ GK++D+ ++A G N+GR G + Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTL 193
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23 Identity = 66/193 (34.20%), Postives = 103/193 (53.37%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA---IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 620 H +R ++P W + K G +A + SPGPH L +PL + IR+ L+YA RE + I+ + +KVDG VR + +P G MDV+ + TGE +R+V D + + + I +EEA+ KL +V+ KGG + HD R + P IK D+V D+ + + GV + T G N+G G ++ Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVGFHGQLS 195
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23 Identity = 66/188 (35.11%), Postives = 94/188 (50.00%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRLS P W + K + PGPH LPL + IR+ LK N RE K I+ + V VDG R D +P G DVI+L E +R++ D KGR T+H++ E KLC++ KGG L +D I D++ + I +++ +KF+ G + M GG++ G G I Sbjct: 3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLN-ETNVNKLCRINNKTTVKGGKFQLNLNDGTNI-IGSNEYGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKI 188
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23 Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVN--DTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611 H +R AP W + K G + K SPGPH LPL + IR+ L+YA RE + I+ + +KVDG VR D +P G MDVI + TGE +R+V D + + I + EA KL +V+ GG L HD R I PD K+ DT+ D+ I + GVV + T G N+G G Sbjct: 3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23 Identity = 71/192 (36.98%), Postives = 96/192 (50.00%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLD-KMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDAR---TIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H +R AP+ W + K G + + SPGPH L LPL + IR+ LKYA E + I+ + VKVDG VR D +P G MDVI + TGE +R+V D + + I EEA KL +V+ + KGG L HD R T IK D+V D+ I + GV + G N+G G + Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23 Identity = 65/189 (34.39%), Postives = 92/189 (48.68%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVIT 620 HQKRLS P W K + PGPH LPL + IR+ LK N RE K I+ + V VDG R D +P G DVI+L E +R+ D KGR +H++ A KLC++ KGG L +D I D++ + + +I+ ++F G + M GG++ G +G IT Sbjct: 3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNI-LGSNEYSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKIT 189
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22 Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 3 Query: 48 GKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 G H KR++AP W + + + + K PG H +PL+V +R+ LK A N E+K I+ + V VDGKVR D Y G D IS+ ++R+V G+F H + +A K+CK+ +GG L HD T+ K D+V + + KI + G ++M T G++ G +G + Sbjct: 3 GNHLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTM-IASNDYKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189 The following BLAST results are available for this feature:
BLAST of FC931869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931869 ID=FC931869; Name=FC931869; organism=Citrus clementina; type=EST; length=719bpback to top |