FC931869
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20 Identity = 71/220 (32.27%), Postives = 104/220 (47.27%), Query Frame = 3 Query: 60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFTSST-FAMLWTPVRYP*VHVFVIG 716 KRL P + + + + P PG HK + L+ IR+ L+ + RE I+ LVKVDGKV + + GFMDVI E +GE +R+VY+ +G + + A K +VK + G L HD R + D +I V D V + KI + +K G TGG ++G G I+ E + + F +T V+ HVFVIG Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVI--EISGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEGFTTVK---DHVFVIG 220
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20 Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA-----IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611 H RL AP K + +ASPGPH L +PL + +R+ L + + +E K I+ V VDG+VR D YP G MDVI++ + R+V D +I EE+++KL ++ L KGG+ D R + + + T+K+ I +IL F V +MA GG+N G +G Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIG 193
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20 Identity = 69/220 (31.36%), Postives = 104/220 (47.27%), Query Frame = 3 Query: 60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFTSST-FAMLWTPVRYP*VHVFVIG 716 KRL + + + + P +PG H + L+ IR+ LK + RE I+ LVKVDGK + + GFMDVI E GE +R+VY+ +G + + E A KL KV+ + G L THD RT D + KV D V + KI + +K G T G ++ + G I+ E +G + F ++ ++ HVF+IG Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEGFSTIK---DHVFMIG 220
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20 Identity = 55/205 (26.83%), Postives = 102/205 (49.76%), Query Frame = 3 Query: 51 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRY-PDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFTSSTF 662 +HQKRL+ P+ W +++ + T+ KA GPH +PL+V +R+ L Y + +E + + V V+G +D P G D+++ + GE FR+ D GR + + E A +L K+ + GG L HD + D D++ VD + ++ +++ G ++ A G++ GR+G + + G +++ F Sbjct: 3 RHQKRLAVPNSWPVERKTNTFTVKAGAGPHGEAG-VPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGSGSNTVF 206
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20 Identity = 54/193 (27.98%), Postives = 96/193 (49.74%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 +G KHQKR+S+ + K G + K S GPH + L+ I+ A N +E + ++ + V+GK +P MD IS +H+R++ G+ TV+ I E + K+CKV ++ ++T D R ++ IKV D++ + +I+ +KF+ G + + T G+++G + VI Sbjct: 3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVI 195
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19 Identity = 54/189 (28.57%), Postives = 96/189 (50.79%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPD-PAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRL+ P W +++ Y KA+ GPH + +PL++ +R+ L Y + +E + + Q + ++G +D P G D+++ ++ E++R+ D GR ++ I + A KL K+ GG L HD T+ D A ND++ V +I+ ++ G ++ A G + GR+G I Sbjct: 4 HQKRLAVPKSWPVERKEEAYTTKAAAGPHG-EEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTI 191
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19 Identity = 58/188 (30.85%), Postives = 93/188 (49.47%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRLS P W +++ + T+ KA GPH +PL+V +R+ L+Y + E + + V V+G D P G D+++ E++R+ D GR + I A+ A KL KV GG L HD + + A D+V VD T +I+ +++ G ++ A G++ G +G I Sbjct: 4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEI 190
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19 Identity = 58/188 (30.85%), Postives = 93/188 (49.47%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRLS P W +++ + T+ KA GPH +PL+V +R+ L+Y + E + + V V+G D P G D+++ E++R+ D GR + I A+ A KL KV GG L HD + + A D+V VD T +I+ +++ G ++ A G++ G +G I Sbjct: 4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEI 190
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19 Identity = 55/189 (29.10%), Postives = 96/189 (50.79%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 HQKRLS P+ W +++ + T+ KA GPH +PL++ +R+ L YA N +E + + + V ++GK +D P G D+++ + E++R+ GR + I + A+ KL K+ GG L HD T I D D++ V G+++ +++ G ++ A G + G VG + Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEV 191
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19 Identity = 61/191 (31.94%), Postives = 91/191 (47.64%), Query Frame = 3 Query: 54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617 H R AP ++ K + + + GPH + +PL V IR+ LK A RE K I+ V VDGKVR D YP G MD++S+ +FR++ D +I A+EA YK ++ K G L D R I + K T+K+++ + +ILD + GGRN+G G++ Sbjct: 3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIV 193 The following BLAST results are available for this feature:
BLAST of FC931869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931869 ID=FC931869; Name=FC931869; organism=Citrus clementina; type=EST; length=719bpback to top |