FC931869

Overview
NameFC931869
Unique NameFC931869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15316 contig Ccv1_Contig15316:33..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 71/220 (32.27%), Postives = 104/220 (47.27%), Query Frame = 3
Query:   60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFTSST-FAMLWTPVRYP*VHVFVIG 716
            KRL  P    + + +  + P   PG HK    + L+  IR+ L+ +   RE   I+   LVKVDGKV  +  +  GFMDVI  E +GE +R+VY+ +G   +     + A  K  +VK   +  G    L  HD R +   D +I V D V   +   KI + +K   G     TGG ++G  G I+  E  +    +   F   +T V+    HVFVIG
Sbjct:    6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVI--EISGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEGFTTVK---DHVFVIG 220          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPA-----IKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVG 611
            H  RL AP      K    +  +ASPGPH L   +PL + +R+ L +  + +E K I+    V VDG+VR D  YP G MDVI++     + R+V D        +I  EE+++KL ++    L KGG+      D R +     +     +    T+K+ I   +IL    F   V +MA GG+N G +G
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIG 193          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 69/220 (31.36%), Postives = 104/220 (47.27%), Query Frame = 3
Query:   60 KRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFTSST-FAMLWTPVRYP*VHVFVIG 716
            KRL       + + +  + P  +PG H     + L+  IR+ LK +   RE   I+   LVKVDGK   +  +  GFMDVI  E  GE +R+VY+ +G   + +   E A  KL KV+   +  G    L THD RT    D + KV D   V +   KI + +K   G     T G ++ + G I+  E  +G   +   F   ++ ++    HVF+IG
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI--EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEGFSTIK---DHVFMIG 220          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 55/205 (26.83%), Postives = 102/205 (49.76%), Query Frame = 3
Query:   51 KHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRY-PDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFTSSTF 662
            +HQKRL+ P+ W +++ + T+  KA  GPH     +PL+V +R+ L Y  + +E +  +    V V+G   +D   P G  D+++  + GE FR+  D  GR  +  +  E A  +L K+    +  GG   L  HD   +    D      D++ VD  +  ++   +++ G ++ A  G++ GR+G +   +   G  +++ F
Sbjct:    3 RHQKRLAVPNSWPVERKTNTFTVKAGAGPHGEAG-VPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGSGSNTVF 206          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 54/193 (27.98%), Postives = 96/193 (49.74%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            +G  KHQKR+S+ +     K  G +  K S GPH     + L+  I+     A N +E + ++    + V+GK      +P   MD IS     +H+R++    G+ TV+ I   E + K+CKV ++         ++T D R ++     IKV D++ +     +I+  +KF+ G + + T G+++G + VI
Sbjct:    3 KGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVI 195          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 54/189 (28.57%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPD-PAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            HQKRL+ P  W +++    Y  KA+ GPH   + +PL++ +R+ L Y  + +E +  + Q  + ++G   +D   P G  D+++ ++  E++R+  D  GR ++  I  + A  KL K+       GG   L  HD  T+   D  A   ND++ V     +I+    ++ G ++ A  G + GR+G I
Sbjct:    4 HQKRLAVPKSWPVERKEEAYTTKAAAGPHG-EEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTI 191          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 58/188 (30.85%), Postives = 93/188 (49.47%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            HQKRLS P  W +++ + T+  KA  GPH     +PL+V +R+ L+Y  +  E +  +    V V+G    D   P G  D+++     E++R+  D  GR  +  I A+ A  KL KV       GG   L  HD   +   + A    D+V VD  T +I+   +++ G ++ A  G++ G +G I
Sbjct:    4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEI 190          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 58/188 (30.85%), Postives = 93/188 (49.47%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            HQKRLS P  W +++ + T+  KA  GPH     +PL+V +R+ L+Y  +  E +  +    V V+G    D   P G  D+++     E++R+  D  GR  +  I A+ A  KL KV       GG   L  HD   +   + A    D+V VD  T +I+   +++ G ++ A  G++ G +G I
Sbjct:    4 HQKRLSVPKSWPVERKTETFTAKAGAGPHG-ESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEI 190          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 55/189 (29.10%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART-IRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            HQKRLS P+ W +++ + T+  KA  GPH     +PL++ +R+ L YA N +E +  + +  V ++GK  +D   P G  D+++  +  E++R+     GR  +  I  + A+ KL K+       GG   L  HD  T I   D      D++ V    G+++   +++ G ++ A  G + G VG +
Sbjct:    4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEV 191          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 61/191 (31.94%), Postives = 91/191 (47.64%), Query Frame = 3
Query:   54 HQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTI---RYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVI 617
            H  R  AP   ++ K    +  + + GPH +   +PL V IR+ LK A   RE K I+    V VDGKVR D  YP G MD++S+     +FR++ D        +I A+EA YK  ++      K G   L   D R I   +      K   T+K+++ + +ILD          +  GGRN+G  G++
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIV 193          
The following BLAST results are available for this feature:
BLAST of FC931869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_THEVO3.549e-2032.2730S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_METS53.549e-2032.4630S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_THEAC6.053e-2031.3630S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_HALLT6.053e-2026.8330S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]
RS4_BIGNA7.906e-2027.9840S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_NATPD2.300e-1928.5730S ribosomal protein S4e OS=Natronomonas pharaoni... [more]
RS4E_HALSA2.300e-1930.8530S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS32.300e-1930.8530S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALMA2.300e-1929.1030S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_SULSO3.004e-1931.9430S ribosomal protein S4e OS=Sulfolobus solfataric... [more]

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Properties
Property NameValue
Genbank descriptionC34202A11EF PostHarveN Citrus clementina cDNA clone C34202A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931869 ID=FC931869; Name=FC931869; organism=Citrus clementina; type=EST; length=719bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAATCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCTGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCACA
TCGTCCACGTTCGCGATGCTCTGGACACCAGTTCGCTACCCGTGAGTCCA
CGTCTTCGTCATTGGACAG
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