FC931874

Overview
NameFC931874
Unique NameFC931874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15404 contig Ccv1_Contig15404:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  308 KDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKE-VTGA 565
            K  F   +K AGDK VV+D    WCGPC+ IAPK+ E+AK++ DVIF K+D + EN   A+   I+ +PTFK  K  K + + V GA
Sbjct:    8 KADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVD-ENDETAEAEKIQAMPTFKFYKSGKALSDYVQGA 93          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  329 VKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            +KAAG+K VV+D    WCGPCK+I P F  L  K+ DV+F+++D + + + +A    ++ +PTF+  K+ K V+E +GA  E L
Sbjct:   15 LKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVD-DAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKL 97          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 595
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFK-ILKDNKVVKEVTGAKLEDLVFAID 595
            +K  F   + AAGDK VV+D    WCGPCK+I P F  L++KYS+VIFL++D + + + +A E  ++ +PTF+   K  + V E +GA  E L   I+
Sbjct:    7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD-DCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATIN 103          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  278 ATVGEVTEVNKDTFWPIV---KAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKY-SDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            A  G+V   + +  W +        +K +V+D    WC PC++IAP F +LAKK+ S  IF K+D + E +S+AKE G+  +PTF  +K  +VV ++ GA  EDL
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVD-ELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDL 106          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  278 ATVGEVTEVNKDTFWP--IVKAAGDKT-VVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            A  G+V  V+    W   + K   DK  +V+D    WCGPCK IA  + ELAKK   V FLK+D + E KS+A +  +  +PTF  LK+ K+V +V GAK ++L
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDEL 104          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  305 NKDTF---WPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            NKD F       K AG K V++D    WCGPC+ IAP F E AKK+   +FLK+D + E K +A++  +  +PTF  +KD     +V GA+ +DL
Sbjct:   13 NKDEFDAQMTKAKEAG-KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVD-ELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 105          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  305 NKDTF---WPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            NKD F       K AG K V++D    WCGPC+ IAP F E AKK+   +FLK+D + E K +A++  +  +PTF  +KD     +V GA+ +DL
Sbjct:   13 NKDEFDAQMTKAKEAG-KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVD-ELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 105          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  272 AGATVGEVTEVNKDTFWPIV---KAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            A    GEV  V+    W +      A  K VV+D    WCGPC+++AP F +LAKK+   +FLK+D + E K +A++  +  +PTF  +K+  V   V GA  E+L
Sbjct:   13 AAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVD-ELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 117          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  305 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSD-VIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 580
            NKD     +  A DK VV+D Y  WCGPCK+IAPK  ELA +YSD V+ LK++ + EN+ +  E  +  +PTF  +K   V++   G   + L
Sbjct:    7 NKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVD-ENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKL 98          
The following BLAST results are available for this feature:
BLAST of FC931874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
THIO_GEOCY8.366e-1447.13Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_CHICK8.366e-1441.67Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_BOVIN8.366e-1439.18Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_PONAB1.427e-1341.84Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
TRXH4_ARATH1.864e-1339.05Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC1.864e-1342.31Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_ORYSJ2.434e-1342.11Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI2.434e-1342.11Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_WHEAT3.179e-1337.74Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
THIOT_DROME3.179e-1341.94Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

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Properties
Property NameValue
Genbank descriptionC34202B04EF PostHarveN Citrus clementina cDNA clone C34202B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931874 ID=FC931874; Name=FC931874; organism=Citrus clementina; type=EST; length=711bp
GACGGAACACAAAACACATATTTTTGTTACTTCACTCTCCACCACAAAAA
TCAAAATGTCTTTACTCCAATTCTCCTCCACCACGGTCCGATCTCCGACG
TCGGTACCGTGCTCCGGGAATCACCAGATCACAGCCTCTGCTTTCTCAGC
GGGAGTCTCAAGCTCAAGAACCGGCTCTTACTCCTCGTCATTAGTAGCGA
AGAAGGCGAATAAGAAGAGCAATAAGCAGCTAAACGGCGGTGTTTTCACG
GTGAGATCGAGCTTGGAGATTGCGGGGGCCACAGTGGGAGAGGTCACTGA
AGTAAATAAGGATACTTTTTGGCCCATCGTTAAGGCCGCCGGTGATAAGA
CTGTTGTTCTTGATATGTACACTCAATGGTGTGGTCCTTGTAAAGTGATA
GCTCCAAAATTTCAAGAATTAGCCAAAAAGTACTCCGATGTTATATTTCT
AAAGCTTGATTGCAACCAAGAGAACAAGTCATTGGCGAAAGAGCTTGGAA
TAAGGGTTGTTCCTACTTTCAAGATTCTGAAAGACAATAAGGTTGTAAAG
GAAGTGACGGGGGCCAAATTGGAAGACCTAGTTTTCGCCATTGATGCTGT
TAGATCCGGTTGAAAATTCTTTCCTATTATTTCTCCTGTAAAACTATAGC
AATATGATCAGCAATGTGTACGTGCTTGAGAATAATTGATTGGTCCACTT
GTATGTATTTA
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