FC931874

Overview
NameFC931874
Unique NameFC931874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15404 contig Ccv1_Contig15404:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  353 VVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 565
            V++D +  WCGPC+++AP   E+A++YSD + +      EN S+A + GIR +PT  I KD + V  V GA
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGA 93          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 32/83 (38.55%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  272 AGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTF 520
            AG  + ++T   +  F   +K AGD+ V++D Y  WCG C+ + PK  + AK++ +++FLK++ + ENKSL K L ++V+P F
Sbjct:   91 AGPNMIDITSAEQ--FLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFD-ENKSLCKSLNVKVLPYF 170          
BLAST of FC931874 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  344 DKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 565
            +K V++D +  WCGPC++I+P   ELA++Y + + +      EN S++ E GIR +PT  + KD K V  V GA
Sbjct:   20 EKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGA 93          
The following BLAST results are available for this feature:
BLAST of FC931874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
THIO1_SYNE76.629e-1142.25Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
TRXL2_ARATH8.658e-1138.55Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
THIO_CYACA8.658e-1140.54Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34202B04EF PostHarveN Citrus clementina cDNA clone C34202B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931874 ID=FC931874; Name=FC931874; organism=Citrus clementina; type=EST; length=711bp
GACGGAACACAAAACACATATTTTTGTTACTTCACTCTCCACCACAAAAA
TCAAAATGTCTTTACTCCAATTCTCCTCCACCACGGTCCGATCTCCGACG
TCGGTACCGTGCTCCGGGAATCACCAGATCACAGCCTCTGCTTTCTCAGC
GGGAGTCTCAAGCTCAAGAACCGGCTCTTACTCCTCGTCATTAGTAGCGA
AGAAGGCGAATAAGAAGAGCAATAAGCAGCTAAACGGCGGTGTTTTCACG
GTGAGATCGAGCTTGGAGATTGCGGGGGCCACAGTGGGAGAGGTCACTGA
AGTAAATAAGGATACTTTTTGGCCCATCGTTAAGGCCGCCGGTGATAAGA
CTGTTGTTCTTGATATGTACACTCAATGGTGTGGTCCTTGTAAAGTGATA
GCTCCAAAATTTCAAGAATTAGCCAAAAAGTACTCCGATGTTATATTTCT
AAAGCTTGATTGCAACCAAGAGAACAAGTCATTGGCGAAAGAGCTTGGAA
TAAGGGTTGTTCCTACTTTCAAGATTCTGAAAGACAATAAGGTTGTAAAG
GAAGTGACGGGGGCCAAATTGGAAGACCTAGTTTTCGCCATTGATGCTGT
TAGATCCGGTTGAAAATTCTTTCCTATTATTTCTCCTGTAAAACTATAGC
AATATGATCAGCAATGTGTACGTGCTTGAGAATAATTGATTGGTCCACTT
GTATGTATTTA
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