FC931879

Overview
NameFC931879
Unique NameFC931879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: LYPA1_BOVIN (Acyl-protein thioesterase 1 OS=Bos taurus GN=LYPLA1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-----PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +V    K  A V++LHGLGD G  W++    +   +IK+ICP AP  P+T+       +WFD+  LS D  +D  G+  AA +V  L+  E     P++ ++ +GGFS G A +LY+A                KL+ V  LS WLP
Sbjct:   13 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSAHIKYICPHAPVMPVTLNMNMAMPSWFDIIGLSPDSLEDETGIKQAAENVKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALTTQQ-----------KLAGVTALSCWLP 147          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: APTH1_CRYNE (Acyl-protein thioesterase 1 OS=Cryptococcus neoformans GN=CNF02430 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  198 VRPKGKHQATVVWLHGLGDNGSSWSQLLETL--PLPNIKWICPTAPTRPMTIFGGFPSTAWFDV---GDLSEDVPDDLEGLDAAAAHVVNLLSTEP----TDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            + PK  H ATV++LHGLGD+G  W  + + L    PN+KWI P APT P+++  G    +WFD+     L     DD +G+      V  L+  E      + ++ +GGFS G A ++            N      KL+ VV LS W+P
Sbjct:   10 ISPKEAHTATVIFLHGLGDSGHGWLPVAKMLWSSFPNVKWILPHAPTIPVSLNHGMAMPSWFDIRHLDKLDNSENDDEQGMLETLKSVDELIQAEVDSGIPENRIVLGGFSQGGAISVL-----------NMLTTKRKLAGVVALSTWVP 148          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: APTH1_YARLI (Acyl-protein thioesterase 1 OS=Yarrowia lipolytica GN=YALI0A18337g PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  207 KGKHQATVVWLHGLGDNGSSWSQLLE----TLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSE-DVPDDLEGLDAAAAHVVNLLSTEPTDI-----KLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            K  H ATV++LHGLGD+G+ W  L E       L ++K+I P AP +P+++  G    +W+D+ +L+  +   D EG+  +   + +L+  E TD      ++ +GGFS G A +L             G     KL  +VGLSG++P
Sbjct:   12 KAAHTATVIFLHGLGDSGAGWMFLAEEARKAQRLNHVKFIFPEAPQQPVSLNFGMRMPSWYDIKELANVNAAQDQEGILESVGRLESLIK-EETDAGVPANRIVIGGFSQGCAVSL-----------ATGCLTQTKLGGIVGLSGYVP 147          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: APT12_DICDI (Acyl-protein thioesterase 1 homolog 2 OS=Dictyostelium discoideum GN=DDB_G0268064 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 53/152 (34.87%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  198 VRPKGKHQATVVWLHGLGDNGSSWSQLLETL----PLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTDIKLGV-------GGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            ++ K  H ATV++LHGL D G  W   +E +     L +IK++ PTAPT P++I  G   TAW +V        +DL GL+ +   V  L+  E   IK G+        GFS G A  LY+     H           KL+A++ LSG+ P
Sbjct:    7 IKSKSTHTATVIFLHGLMDTGKGWETRMENIISMGGLDHIKFVLPTAPTIPISINFGNKGTAWCNVTAFYPGSEEDLIGLEKSMKLVEALIEEE---IKNGIPAERIILSGFSQGGALTLYTGYQSKH-----------KLAALITLSGFSP 144          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: LYPL1_MOUSE (Lysophospholipase-like protein 1 OS=Mus musculus GN=Lyplal1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQ-----LLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-PTDI---KLGVGGFSMGAATALYSA 533
            VV P G+H A++++LHG G +G    +     L + L   +IK I PTAP+RP T   G  S  WFD   +S D P+ LE +D+    +  L+  E  T I   ++ +GGFSMG   A++ A
Sbjct:   14 VVSPTGRHSASLIFLHGSGHSGQGQREWIKHVLNQDLTFQHIKIIYPTAPSRPYTPLKGGLSNVWFDRFKISMDCPEHLESIDSMCQVLSGLIDEEVKTGIQKSRILIGGFSMGGCMAMHLA 135          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: APTH1_GIBZE (Acyl-protein thioesterase 1 OS=Gibberella zeae GN=FG06404 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 48/153 (31.37%), Postives = 75/153 (49.02%), Query Frame = 3
Query:  213 KHQATVVWLHGLGDNGSSWSQLLET----LPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVP-----DDLEGLDAAAAHVVNLLSTE----PTDIKLGVGGFSMGAATALYSA-TCFAHGKYGNGNPYPAKLSAVVGLSGWLPCSR 629
            +H ATV+++HGLGD G  W+  +E       +  +K+I P AP  P+++  G     WFD+  L  DV      +D EG+  +  +  NL+  E        ++ +GGFS G A +L +  TC             +KL  ++GLS WL  S+
Sbjct:   16 QHTATVIFVHGLGDTGHGWASAVENWRRRQKMDEVKFILPHAPQIPISVNMGMRMPGWFDIKQLGGDVDSLIRNEDTEGIKLSQKYFHNLIQQEIDSGIVPERIVLGGFSQGGAMSLLAGLTC------------TSKLGGILGLSSWLLLSK 156          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: LYPL1_PONAB (Lysophospholipase-like protein 1 OS=Pongo abelii GN=LYPLAL1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSS---WSQ--LLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-PTDIK---LGVGGFSMGAATALYSA 533
            +V P G+H A++++LHG GD+G     W +  L + L   +IK I PTAP R  T   G  S  WFD   ++ D P+ LE +D     + +L+  E  + IK   + +GGFSMG + A++ A
Sbjct:   13 IVSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGSMAMHLA 134          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: LYPL1_HUMAN (Lysophospholipase-like protein 1 OS=Homo sapiens GN=LYPLAL1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSS---WSQ--LLETLPLPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTE-PTDIK---LGVGGFSMGAATALYSA 533
            +V P G+H A++++LHG GD+G     W +  L + L   +IK I PTAP R  T   G  S  WFD   ++ D P+ LE +D     + +L+  E  + IK   + +GGFSMG   A++ A
Sbjct:   13 IVSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAIHLA 134          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: APTH1_USTMA (Acyl-protein thioesterase 1 OS=Ustilago maydis GN=UM00130 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 51/165 (30.91%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  186 RTYVVRPKG--KHQATVVWLHGLGDNGSSWSQLLETLP----LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSE-DVPDDLEGLDAAAAHVVNLLSTE-------------PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +T V+ P+   K  AT+ +LHGLGD+ + WS + + L     L +++++ P AP +P+T+  G P  +WFD+  L +    +D  GL  +   +  L+  E             P++ ++ VGGFS G A +L +         G  NP P  ++ V  LS WLP
Sbjct:    5 KTLVINPRSGVKPTATLFFLHGLGDSSAGWSDVAQMLSQRPSLSHVRFVLPNAPIQPVTLNMGMPMPSWFDILALDDLSGAEDEAGLLKSTDEIKKLIKAENDGTAKDLDGHKIPSE-RIVVGGFSQGGAISLLT---------GLTNPTP--VAGVAALSTWLP 157          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: EST1_PSEFL (Carboxylesterase 1 OS=Pseudomonas fluorescens GN=estA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEP-TDI---KLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLP 620
            +++P     A V+WLHGLG +   +  + E L   L + +++ P APTRP+TI GG+   +W+D+  +S      LE L+ +A  V +L+ T+  T I   ++ + GFS G A   ++A             +   L  V+ LS + P
Sbjct:    6 ILQPAKPADACVIWLHGLGADRYDFLPVAEALQETLLSTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELETSAKTVTDLIETQQRTGIDTSRIFLAGFSQGGAVVFHTAF----------KKWEGPLGGVIALSTYAP 143          
The following BLAST results are available for this feature:
BLAST of FC931879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
LYPA1_BOVIN3.980e-1635.37Acyl-protein thioesterase 1 OS=Bos taurus GN=LYPLA... [more]
APTH1_CRYNE4.400e-1534.00Acyl-protein thioesterase 1 OS=Cryptococcus neofor... [more]
APTH1_YARLI1.084e-1333.11Acyl-protein thioesterase 1 OS=Yarrowia lipolytica... [more]
APT12_DICDI2.414e-1334.87Acyl-protein thioesterase 1 homolog 2 OS=Dictyoste... [more]
LYPL1_MOUSE4.118e-1337.70Lysophospholipase-like protein 1 OS=Mus musculus G... [more]
APTH1_GIBZE5.379e-1331.37Acyl-protein thioesterase 1 OS=Gibberella zeae GN=... [more]
LYPL1_PONAB9.175e-1336.89Lysophospholipase-like protein 1 OS=Pongo abelii G... [more]
LYPL1_HUMAN1.198e-1236.89Lysophospholipase-like protein 1 OS=Homo sapiens G... [more]
APTH1_USTMA2.044e-1230.91Acyl-protein thioesterase 1 OS=Ustilago maydis GN=... [more]
EST1_PSEFL2.260e-1130.41Carboxylesterase 1 OS=Pseudomonas fluorescens GN=e... [more]

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Properties
Property NameValue
Genbank descriptionC34202B09EF PostHarveN Citrus clementina cDNA clone C34202B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931879 ID=FC931879; Name=FC931879; organism=Citrus clementina; type=EST; length=709bp
GGGGCAACGAGAGAGAACTCAGCTCGTGGAGTTATCACATAGCTCTGGAG
TTCTGCTTCTGGATCTGTGCTCTTCTCAGTTACTTTACCTGCATTGGTGA
TAATCTTTCAAGGGTTAAAATGAGCTTTACAGGGCCATCCATGAGTTCTG
GGGGTAATACTGTTAGAAGAGCAATTGAGTTCGGAAGGACCTATGTGGTC
AGGCCCAAAGGTAAACACCAAGCCACTGTTGTGTGGCTTCATGGGCTTGG
CGATAATGGTTCAAGCTGGTCCCAGCTCCTCGAGACTCTTCCTCTTCCAA
ATATTAAATGGATTTGCCCGACTGCCCCTACTCGACCAATGACTATATTT
GGCGGCTTTCCATCCACTGCCTGGTTTGATGTGGGAGACCTTTCAGAAGA
TGTTCCTGATGACTTAGAGGGTTTAGATGCTGCAGCTGCACATGTTGTGA
ATTTATTGTCCACTGAGCCCACTGACATTAAACTTGGTGTTGGAGGTTTC
AGTATGGGAGCAGCAACCGCACTGTACTCTGCAACCTGCTTTGCCCATGG
AAAATATGGGAATGGCAATCCATACCCTGCTAAATTGAGTGCAGTTGTAG
GACTGAGTGGCTGGCTTCCTTGCTCAAGACCTTGAAGAACAACTAGGTGG
AGAAATGAAGCTAGAGACGTGCTGCATCCTTGCCATTTGCTCTGCATGNA
AAGTGATGA
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