FC931879

Overview
NameFC931879
Unique NameFC931879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14338 contig Ccv1_Contig14338:11..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: APTH1_ASHGO (Acyl-protein thioesterase 1 OS=Ashbya gossypii GN=AGL188W PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  240 HGLGDNGSSWSQLLETLP----LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALYSATCFAH 548
            HGLGD+G+ W+ L E L     L + +++ PTAP RP+T     P+TAW DV         DLEG + +   V  L+  +        ++ +GGFS GAA  + +A  F H
Sbjct:   24 HGLGDSGAGWTFLAEYLQRDPALASAQFVFPTAPVRPITANNFAPATAWLDVRSWLSHESVDLEGFNESMKLVPKLIEEQVAQGIPYERIWIGGFSQGAALTMGTALSFPH 134          
BLAST of FC931879 vs. ExPASy Swiss-Prot
Match: EST2_PSEFL (Carboxylesterase 2 OS=Pseudomonas fluorescens GN=estB PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEP-TDI---KLGVGGFSMGAATALYSATCFAHGKYG 560
            +++P     A V+WLHGLG +   +  + E L   L   +++ P APTRP+TI GG+   +W+D+  +S      LE L+ +A  V +L+  +  T I   ++ + GFS G A   ++A     G  G
Sbjct:    6 ILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLG 133          
The following BLAST results are available for this feature:
BLAST of FC931879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
APTH1_ASHGO5.034e-1136.04Acyl-protein thioesterase 1 OS=Ashbya gossypii GN=... [more]
EST2_PSEFL8.587e-1132.03Carboxylesterase 2 OS=Pseudomonas fluorescens GN=e... [more]

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Properties
Property NameValue
Genbank descriptionC34202B09EF PostHarveN Citrus clementina cDNA clone C34202B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931879 ID=FC931879; Name=FC931879; organism=Citrus clementina; type=EST; length=709bp
GGGGCAACGAGAGAGAACTCAGCTCGTGGAGTTATCACATAGCTCTGGAG
TTCTGCTTCTGGATCTGTGCTCTTCTCAGTTACTTTACCTGCATTGGTGA
TAATCTTTCAAGGGTTAAAATGAGCTTTACAGGGCCATCCATGAGTTCTG
GGGGTAATACTGTTAGAAGAGCAATTGAGTTCGGAAGGACCTATGTGGTC
AGGCCCAAAGGTAAACACCAAGCCACTGTTGTGTGGCTTCATGGGCTTGG
CGATAATGGTTCAAGCTGGTCCCAGCTCCTCGAGACTCTTCCTCTTCCAA
ATATTAAATGGATTTGCCCGACTGCCCCTACTCGACCAATGACTATATTT
GGCGGCTTTCCATCCACTGCCTGGTTTGATGTGGGAGACCTTTCAGAAGA
TGTTCCTGATGACTTAGAGGGTTTAGATGCTGCAGCTGCACATGTTGTGA
ATTTATTGTCCACTGAGCCCACTGACATTAAACTTGGTGTTGGAGGTTTC
AGTATGGGAGCAGCAACCGCACTGTACTCTGCAACCTGCTTTGCCCATGG
AAAATATGGGAATGGCAATCCATACCCTGCTAAATTGAGTGCAGTTGTAG
GACTGAGTGGCTGGCTTCCTTGCTCAAGACCTTGAAGAACAACTAGGTGG
AGAAATGAAGCTAGAGACGTGCTGCATCCTTGCCATTTGCTCTGCATGNA
AAGTGATGA
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