FC931883

Overview
NameFC931883
Unique NameFC931883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPA (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERP3 (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK L   IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVTCPTACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  +PGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARRPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_MORJA (Malate dehydrogenase OS=Moritella japonica GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   +AG+ G D    AL  +DVV+I AGV  KPGM R DLFNINAGI+K+L    A+ CPNA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAAVTPGVAVDLSHIPTDVTIAGFAGTDPT-DALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLAGKCAEVCPNACIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_HAEIE (Malate dehydrogenase OS=Haemophilus influenzae (strain PittEE) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+KL  P  + LALYDIA  TPGVA DV HI T   V G+ G D    ALE +DVV+I AGV  KPGM R DLFNINAGIV+ L   +A  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLALYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAVTCPKACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   ++K CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVSKTCPKACIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.162e-27
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHEPC (Malate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.162e-27
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_HAEIG (Malate dehydrogenase OS=Haemophilus influenzae (strain PittGG) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.162e-27
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+KL  P  + LALYDIA  TPGVA DV HI T   V G+ G D    ALE +DVV+I AGV  KPGM R DLFNINAGIV+ L   +A  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLALYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAITCPKACVGII 117
The following BLAST results are available for this feature:
BLAST of FC931883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
MDH_YERPA8.899e-2858.12Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERP38.899e-2858.12Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_VIBSL8.899e-2862.39Malate dehydrogenase OS=Vibrio splendidus (strain ... [more]
MDH_SALDC8.899e-2860.68Malate dehydrogenase OS=Salmonella dublin (strain ... [more]
MDH_MORJA8.899e-2859.83Malate dehydrogenase OS=Moritella japonica GN=mdh ... [more]
MDH_HAEIE8.899e-2862.39Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_ECOSE8.899e-2858.97Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_SHESW1.162e-2759.83Malate dehydrogenase OS=Shewanella sp. (strain W3-... [more]
MDH_SHEPC1.162e-2759.83Malate dehydrogenase OS=Shewanella putrefaciens (s... [more]
MDH_HAEIG1.162e-2762.39Malate dehydrogenase OS=Haemophilus influenzae (st... [more]

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Properties
Property NameValue
Genbank descriptionC34202C01EF PostHarveN Citrus clementina cDNA clone C34202C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931883 ID=FC931883; Name=FC931883; organism=Citrus clementina; type=EST; length=516bp
GAAACCCTCGCCTTTCTCGTTCAACGGTCTCTTCATTATCATTTCTCTCC
CTGCCTCTCTAAAGTTTAAACCCGCAACAAAAATGAGATCTTCAGTTCTC
CGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGCTACTCCTC
CGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGCTGGCGGGA
TCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTGTCTCCAGG
CTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCTGATGTCGG
CCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAATGATCAGC
TTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGGCTGGTGTT
CCCGGGAAACCGGGTATGACGCGTGATGATCTATTTAACATCAATGCTGG
AATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCCCAATGCAA
TTGTTAACATGATTAG
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