FC931883

Overview
NameFC931883
Unique NameFC931883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_HAEI8 (Malate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.162e-27
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+KL  P  + LALYDIA  TPGVA DV HI T   V G+ G D    ALE +DVV+I AGV  KPGM R DLFNINAGIV+ L   +A  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTDLALYDIAPVTPGVAVDVSHIPTAVNVKGFSGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRGLIEKVAITCPKACVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_CITK8 (Malate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.162e-27
Identity = 71/117 (60.68%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IA  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.162e-27
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KV +LGA+GGIGQPL+LL+KL+ P  S L+LYD+A  TPGVA D+ HI T  EV G+ G+D   +AL+ +D+V+I AGV  KPGMTR DLFN+NAGI+++L   +A+ CP A V +I
Sbjct:    2 KVTLLGASGGIGQPLSLLLKLHLPAESDLSLYDVAPVTPGVAKDISHIPTSVEVEGFGGDDP-SEALKGADIVLICAGVARKPGMTRADLFNVNAGIIQNLVEKVAQVCPQACVCII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHEHH (Malate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA   PGVA D+ HI T  EV G+ G D    ALE +DVV+I AGV  KPGM R DLFNINAGIV++L    A  CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVIPGVAVDLSHIPTAVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 70/117 (59.83%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IA  CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFAGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIATTCPKACIGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE ++VV+I AGV  KPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGANVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.982e-27
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV++ AGV  KPGM R DLFN+NAGIVK L   IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPT-PALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAEKIAVVCPKACVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHESR (Malate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.982e-27
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHESM (Malate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.982e-27
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL  +DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSQLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
The following BLAST results are available for this feature:
BLAST of FC931883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
MDH_HAEI81.162e-2762.39Malate dehydrogenase OS=Haemophilus influenzae (st... [more]
MDH_CITK81.162e-2760.68Malate dehydrogenase OS=Citrobacter koseri (strain... [more]
MDH_ACTSZ1.162e-2756.41Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_SHEON1.518e-2759.83Malate dehydrogenase OS=Shewanella oneidensis GN=m... [more]
MDH_SHEHH1.518e-2759.83Malate dehydrogenase OS=Shewanella halifaxensis (s... [more]
MDH_ESCF31.518e-2759.83Malate dehydrogenase OS=Escherichia fergusonii (st... [more]
MDH_ECOLU1.518e-2758.97Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_VIBCH1.982e-2761.54Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_SHESR1.982e-2759.83Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]
MDH_SHESM1.982e-2759.83Malate dehydrogenase OS=Shewanella sp. (strain MR-... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202C01EF PostHarveN Citrus clementina cDNA clone C34202C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931883 ID=FC931883; Name=FC931883; organism=Citrus clementina; type=EST; length=516bp
GAAACCCTCGCCTTTCTCGTTCAACGGTCTCTTCATTATCATTTCTCTCC
CTGCCTCTCTAAAGTTTAAACCCGCAACAAAAATGAGATCTTCAGTTCTC
CGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGCTACTCCTC
CGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGCTGGCGGGA
TCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTGTCTCCAGG
CTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCTGATGTCGG
CCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAATGATCAGC
TTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGGCTGGTGTT
CCCGGGAAACCGGGTATGACGCGTGATGATCTATTTAACATCAATGCTGG
AATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCCCAATGCAA
TTGTTAACATGATTAG
back to top