FC931883

Overview
NameFC931883
Unique NameFC931883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.760e-40
Identity = 80/118 (67.80%), Postives = 93/118 (78.81%), Query Frame = 2
Query:  161 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G  QL  AL   D+VIIPAG+P KPGMTRDDLF INAGIVK LC  +AK CPNAIVN+I
Sbjct:   41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLI 158          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 89/166 (53.61%), Postives = 112/166 (67.47%), Query Frame = 2
Query:   17 SFNGLFIIISLPASLKFKPATKMRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            SF GL     +  S     A  +R SV ++  +  KP G +  +S      KVAVLGAAGGIGQPL+LL+K++PLVS L LYDIAN  GVAAD+ H NT S+V  + G  +L   L+D +VV+IPAGVP KPGMTRDDLFNINA IVK L  A+A+ CPNA +++I
Sbjct:   38 SFTGLKSTSLISGSDSSSLAKTLRGSVTKAQTSDKKPYGFKINASY-----KVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHII 198          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.911e-38
Identity = 82/139 (58.99%), Postives = 106/139 (76.26%), Query Frame = 2
Query:  107 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            +  LA+PA A   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G +QL   L+  DVV+IPAGVP KPGMTRDDLFN NA IV  L +A A++ P A++ +I
Sbjct:    2 LSALARPASAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLAAACAQHRPEAMICII 140          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 79/139 (56.83%), Postives = 103/139 (74.10%), Query Frame = 2
Query:  110 KTLAKPAGARGYSSESVPDR----KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KTL + A   G  + SV       KVA+LGAAGGIGQPL LL+K +PLV+ LALYD+ NTPGVAAD+ HI++ ++V  + G  +L  A+E++DV++IPAGVP KPGMTRDDLFN NAGIV+DL + IAK  P A++ +I
Sbjct:    6 KTLVQAAANSGLRAVSVRHSSQAPKVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAII 144          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.755e-35
Identity = 79/130 (60.77%), Postives = 92/130 (70.77%), Query Frame = 2
Query:  113 TLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 499
            T  K    R +S+ S    KVAVLGA GGIGQPL++L+KLN  VS LAL+DI   PGVAAD+GHINT S V GY  +D+ L +AL  +DVVIIPAGVP KPGMTRDDLF  NA IV+DL  A  + CP A
Sbjct:   11 TPLKSIAPRSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEA 140          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.016e-31
Identity = 66/115 (57.39%), Postives = 85/115 (73.91%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVA+LGA+GG+GQPL+LL+KL+P VS LALYDI    G+  D+ HINT S   GY   D +   L ++ VV+IPAGVP KPG+TRDDLF +NAGIVK L +A+ K+ PNA + +I
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAPNARILVI 116          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 6.584e-31
Identity = 72/128 (56.25%), Postives = 88/128 (68.75%), Query Frame = 2
Query:  137 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            R +SS      KV VLGA GGIGQPL+LL+KLN  V+ L LYD+    GVA D+ HI T S V G+     D L  AL+D+D+V+IPAGVP KPGMTRDDLF INA IV+DL +A A+  PNA + +I
Sbjct:    8 RAFSSTVANPYKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVRDLAAATAESAPNAAILVI 135          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.502e-30
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            K+AVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  ++ G+ G D +  ALE++DVV+I AGV  KPGM R DLFNINAGIVK+L   +AK CP A V +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPI-PALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.268e-30
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = 2
Query:  188 AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            A+GGIG+PL+LL+K +PL+S+LALYDIA+  GVAAD+ HI T++ V  ++G  +L + L  ++VVIIPAG+P KPGMTRDDLFN NA IV +L  + AK CP A++ +I
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNASIVAELIDSCAKNCPKAMICII 109          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.574e-30
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            K+AVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  ++ G+ G D    ALE++DVV+I AGV  KPGM R DLFNINAGIVK+L   +AK CP A V +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPT-PALENADVVLISAGVARKPGMDRSDLFNINAGIVKNLIEKVAKTCPKACVGII 117          
The following BLAST results are available for this feature:
BLAST of FC931883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
MDHG1_ARATH7.760e-4067.80Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHP_ARATH6.569e-3953.61Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_MACFA1.911e-3858.99Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_CAEEL3.605e-3756.83Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_SCHPO5.755e-3560.77Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHP_YEAST1.016e-3157.39Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDHM_YEAST6.584e-3156.25Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDH_HAES22.502e-3063.25Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDHM_SCHMA3.268e-3056.88Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDH_HAES15.574e-3063.25Malate dehydrogenase OS=Haemophilus somnus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34202C01EF PostHarveN Citrus clementina cDNA clone C34202C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931883 ID=FC931883; Name=FC931883; organism=Citrus clementina; type=EST; length=516bp
GAAACCCTCGCCTTTCTCGTTCAACGGTCTCTTCATTATCATTTCTCTCC
CTGCCTCTCTAAAGTTTAAACCCGCAACAAAAATGAGATCTTCAGTTCTC
CGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGCTACTCCTC
CGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGCTGGCGGGA
TCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTGTCTCCAGG
CTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCTGATGTCGG
CCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAATGATCAGC
TTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGGCTGGTGTT
CCCGGGAAACCGGGTATGACGCGTGATGATCTATTTAACATCAATGCTGG
AATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCCCAATGCAA
TTGTTAACATGATTAG
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