FC931883

Overview
NameFC931883
Unique NameFC931883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15235 contig Ccv1_Contig15235:9..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ L+LL+K   P  S L+LYD+A   PGVA D+ HI T  +VAG+ G D L +AL+D+D+V+IPAG+P KPGM R DLFN+NAGI+K L   I   CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTGLPAGSELSLYDVAPVVPGVAVDLSHIPTAVKVAGF-GADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKTLAEGIVASCPKALVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ L+LL+K   P  S L+LYD+A   PGVA D+ HI T  +V G+ G D L  AL  SD+V+IPAGVP KPGM R DLFN+NAGIVK+L   +A  CPNA V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAGIVKNLVQGVADNCPNACVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ L+LL+K   P  S LALYD+A   PGVA D+ HI T  +V G+ G D L  AL  +DVV+IPAG+P KPGM R DLFNINAGIVK+L   +A  CPNA V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVKNLIEGVADNCPNACVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.163e-29
Identity = 73/117 (62.39%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+KL  P  S L+LYDIA  TPGVAADV HI T  +V G+ G D    AL+ +DVV+I AGV  KPGM R DLFNINAGIV++L   +A+ CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAGEDPT-PALQGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAQVCPKACVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_VIBVU (Malate dehydrogenase OS=Vibrio vulnificus GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.051e-28
Identity = 73/117 (62.39%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK L   IA  CPNA + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAERIAVVCPNACIGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.051e-28
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVAAD+ HI T+  V G+ G D    AL+D+DVV+I AGV  KPGM R DLFN+NAGIV++L   +A+ CP A++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGEDP-SPALKDADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEKVAQNCPKALIGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.373e-28
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  EV G+ G D    ALE +DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAATCPKALVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_VIBVY (Malate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.793e-28
Identity = 73/117 (62.39%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK L   IA  CPNA + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAERIAVVCPNACIGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.793e-28
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    AL D+DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALVDADVVLISAGVARKPGMDRSDLFNINAGIVRNLMEKVAATCPKALVGII 117          
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.342e-28
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S+L+LYDIA  TPGVA D+ HI T  E+ G+ G D    ALE +DVV+I AGV  KPGM R DLFNINAGIV++L   +A  CP A+V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAVTCPKALVGII 117          
The following BLAST results are available for this feature:
BLAST of FC931883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
MDH_PSEHT1.622e-2958.97Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_IDILO1.622e-2960.68Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_ALTMD1.622e-2961.54Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_PASMU6.163e-2962.39Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_VIBVU1.051e-2862.39Malate dehydrogenase OS=Vibrio vulnificus GN=mdh P... [more]
MDH_PROMH1.051e-2859.83Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_SHEAM1.373e-2861.54Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_VIBVY1.793e-2862.39Malate dehydrogenase OS=Vibrio vulnificus (strain ... [more]
MDH_SHEDO1.793e-2860.68Malate dehydrogenase OS=Shewanella denitrificans (... [more]
MDH_SHESA2.342e-2860.68Malate dehydrogenase OS=Shewanella sp. (strain ANA... [more]

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Properties
Property NameValue
Genbank descriptionC34202C01EF PostHarveN Citrus clementina cDNA clone C34202C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931883 ID=FC931883; Name=FC931883; organism=Citrus clementina; type=EST; length=516bp
GAAACCCTCGCCTTTCTCGTTCAACGGTCTCTTCATTATCATTTCTCTCC
CTGCCTCTCTAAAGTTTAAACCCGCAACAAAAATGAGATCTTCAGTTCTC
CGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGCTACTCCTC
CGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGCTGGCGGGA
TCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTGTCTCCAGG
CTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCTGATGTCGG
CCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAATGATCAGC
TTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGGCTGGTGTT
CCCGGGAAACCGGGTATGACGCGTGATGATCTATTTAACATCAATGCTGG
AATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCCCAATGCAA
TTGTTAACATGATTAG
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