FC931883

Overview
NameFC931883
Unique NameFC931883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15235 contig Ccv1_Contig15235:9..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SALEP (Malate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SALCH (Malate dehydrogenase OS=Salmonella choleraesuis GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IAK CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IAK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   IAK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVI 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK+L   +AK CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of FC931883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
MDH_SALG23.995e-2861.54Malate dehydrogenase OS=Salmonella gallinarum (str... [more]
MDH_SALEP3.995e-2861.54Malate dehydrogenase OS=Salmonella enteritidis PT4... [more]
MDH_SALCH3.995e-2861.54Malate dehydrogenase OS=Salmonella choleraesuis GN... [more]
MDH_SALAR3.995e-2861.54Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_SALA43.995e-2861.54Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_KLEP73.995e-2860.68Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_KLEP33.995e-2860.68Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_ECOUT3.995e-2859.83Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSM3.995e-2859.83Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLI3.995e-2859.83Malate dehydrogenase OS=Escherichia coli (strain K... [more]

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Properties
Property NameValue
Genbank descriptionC34202C01EF PostHarveN Citrus clementina cDNA clone C34202C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931883 ID=FC931883; Name=FC931883; organism=Citrus clementina; type=EST; length=516bp
GAAACCCTCGCCTTTCTCGTTCAACGGTCTCTTCATTATCATTTCTCTCC
CTGCCTCTCTAAAGTTTAAACCCGCAACAAAAATGAGATCTTCAGTTCTC
CGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGCTACTCCTC
CGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGCTGGCGGGA
TCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTGTCTCCAGG
CTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCTGATGTCGG
CCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAATGATCAGC
TTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGGCTGGTGTT
CCCGGGAAACCGGGTATGACGCGTGATGATCTATTTAACATCAATGCTGG
AATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCCCAATGCAA
TTGTTAACATGATTAG
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