FC931883

Overview
NameFC931883
Unique NameFC931883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15235 contig Ccv1_Contig15235:9..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_VIBHB (Malate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.814e-28
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV  KPGM R DLFN+NAGIVK L   IA  CP A V +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPT-PALEGADVVLISAGVARKPGMDRADLFNVNAGIVKSLAEKIAVVCPTACVGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.814e-28
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV  KPGM R DLFNINAGIVK L   IA  CP A + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_VIBF1 (Malate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.814e-28
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G D    ALE +DVV+I AGV  KPGM R DLFNINAGIVK L   IA  CP A + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPT-PALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLTEKIAVTCPKACIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPY (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPS (Malate dehydrogenase OS=Yersinia pseudotuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPP (Malate dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPN (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPG (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPE (Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
[Close]
BLAST of FC931883 vs. ExPASy Swiss-Prot
Match: MDH_YERPB (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.899e-28
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 2 
Query:  170 KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPGKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 514
            KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T   + G+ G D    AL+ +D+V+I AGV  KPGM R DLFN+NAGIV++L   IA+ CPNA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSGEDAT-PALQGADIVLISAGVARKPGMDRSDLFNVNAGIVRNLVEQIARTCPNALIGII 117
The following BLAST results are available for this feature:
BLAST of FC931883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
MDH_VIBHB6.814e-2862.39Malate dehydrogenase OS=Vibrio harveyi (strain ATC... [more]
MDH_VIBFM6.814e-2862.39Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]
MDH_VIBF16.814e-2862.39Malate dehydrogenase OS=Vibrio fischeri (strain AT... [more]
MDH_YERPY8.899e-2858.12Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPS8.899e-2858.12Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPP8.899e-2858.12Malate dehydrogenase OS=Yersinia pestis (strain Pe... [more]
MDH_YERPN8.899e-2858.12Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPG8.899e-2858.12Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERPE8.899e-2858.12Malate dehydrogenase OS=Yersinia pestis GN=mdh PE=... [more]
MDH_YERPB8.899e-2858.12Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]

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Properties
Property NameValue
Genbank descriptionC34202C01EF PostHarveN Citrus clementina cDNA clone C34202C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931883 ID=FC931883; Name=FC931883; organism=Citrus clementina; type=EST; length=516bp
GAAACCCTCGCCTTTCTCGTTCAACGGTCTCTTCATTATCATTTCTCTCC
CTGCCTCTCTAAAGTTTAAACCCGCAACAAAAATGAGATCTTCAGTTCTC
CGATCCGTCAAAACCCTTGCGAAGCCCGCTGGAGCACGCGGCTACTCCTC
CGAGTCCGTGCCCGATCGCAAGGTGGCCGTCCTCGGTGCCGCTGGCGGGA
TCGGCCAGCCACTGGCTTTGCTCATGAAGCTCAACCCGCTTGTCTCCAGG
CTCGCCCTCTATGATATTGCTAACACTCCTGGTGTTGCTGCTGATGTCGG
CCACATCAACACCAGATCTGAGGTTGCTGGGTACATGGGTAATGATCAGC
TTGGCCAAGCTTTGGAGGATTCAGATGTTGTCATCATACCGGCTGGTGTT
CCCGGGAAACCGGGTATGACGCGTGATGATCTATTTAACATCAATGCTGG
AATTGTCAAGGACCTGTGCTCTGCAATTGCCAAGTATTGTCCCAATGCAA
TTGTTAACATGATTAG
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