FC931887

Overview
NameFC931887
Unique NameFC931887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB9 (Chaperone protein htpG OS=Shewanella baltica (strain OS195) GN=htpG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.196e-34
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIG 537
            M + ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +   EL +RI  DK    ++I D+GVGMT+  ++ +LGTIA+SGT +F + L  ++  D  +IG
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIG 121          

HSP 2 Score: 55.4546 bits (132), Expect = 1.196e-34
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA+KV V T+   H  DE  +WES+  G+FTV
Sbjct:  120 IGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTV 164          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB8 (Chaperone protein htpG OS=Shewanella baltica (strain OS185) GN=htpG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.196e-34
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIG 537
            M + ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +   EL +RI  DK    ++I D+GVGMT+  ++ +LGTIA+SGT +F + L  ++  D  +IG
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIG 121          

HSP 2 Score: 55.4546 bits (132), Expect = 1.196e-34
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA+KV V T+   H  DE  +WES+  G+FTV
Sbjct:  120 IGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTV 164          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB5 (Chaperone protein htpG OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=htpG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.196e-34
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIG 537
            M + ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LT+ +  +   EL +RI  DK    ++I D+GVGMT+  ++ +LGTIA+SGT +F + L  ++  D  +IG
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTNDALYEGDGELRVRISADKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIG 121          

HSP 2 Score: 55.4546 bits (132), Expect = 1.196e-34
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA+KV V T+   H  DE  +WES+  G+FTV
Sbjct:  120 IGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTV 164          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_THIDA (Chaperone protein htpG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.196e-34
Identity = 60/117 (51.28%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA DK+RFE+L+D +  +  PEL IRI  D+  + L+I D+G+GM++ ++++++GTIA+SGT+EF   L      D ++IG
Sbjct:    8 ETLGFQAEVKQLLQLMIHSLYSNKDIFLRELISNASDAADKLRFEALSDAALFENDPELKIRIAFDRDARTLTISDNGIGMSRQEVIDHIGTIAKSGTREFFSQLSGDQKKDAALIG 124          

HSP 2 Score: 45.4394 bits (106), Expect = 1.196e-34
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH---NDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA++V +TT+      +    WES+  G +T+
Sbjct:  123 IGQFGVGFYSAFIVADRVTLTTRRAGLTAEHGVRWESEGAGDYTL 167          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_BURS3 (Chaperone protein htpG OS=Burkholderia sp. (strain 383) GN=htpG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.196e-34
Identity = 63/117 (53.85%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P + IRI  DKA + ++I D+G+GM++ + + NLGTIARSGTKEF   L      D ++IG
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYEDDPNVRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLSGDQQKDAALIG 120          

HSP 2 Score: 44.669 bits (104), Expect = 1.196e-34
Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGGSFTV 658
            +GQFGVGFYS ++VA+K+ V T+       E   WES   G FT+
Sbjct:  119 IGQFGVGFYSGFIVADKITVETRRAGLPASEAVRWESAGEGDFTI 163          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_WIGBR (Chaperone protein htpG OS=Wigglesworthia glossinidia brevipalpis GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.557e-34
Identity = 59/110 (53.64%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQ 510
            M + ET  FQ+E+ QLL+L+I++ YSNKEIFLRELISN+SDALDK+RF S++D+     Q +L I I  DK  K+++I D+G+GM+K +++ NLGTIA+SGTK F+++++
Sbjct:    1 MQKKETLEFQSEVKQLLNLMIHSLYSNKEIFLRELISNASDALDKLRFLSISDEKIKIKQNKLCIFIDYDKNKKSITIQDNGIGMSKKEVIENLGTIAKSGTKSFIKSIE 110          

HSP 2 Score: 48.521 bits (114), Expect = 1.557e-34
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTT---KHNDDEQYVWESQAGGSFTVT 661
            +G+FGVGFYS ++V+EKV+V T   K N+    +WES   G +T++
Sbjct:  121 IGKFGVGFYSVFIVSEKVLVLTRSFKENEKNGVLWESSGKGEYTIS 166          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_SHEFN (Chaperone protein htpG OS=Shewanella frigidimarina (strain NCIMB 400) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.557e-34
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIG 537
            M + ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+ +LTD +  +   +L +R+  +K    ++I D+G+GMT+  ++ +LGTIA+SGTKEF   L  +A  D  +IG
Sbjct:    1 MSQQETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTDDTLYEGNGDLRVRVSANKEKGTVTISDNGIGMTRDSVIEHLGTIAKSGTKEFFSNLSGEASKDSQLIG 121          

HSP 2 Score: 51.6026 bits (122), Expect = 1.557e-34
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA+KV V T+   H  +E  +WES+  GSF V
Sbjct:  120 IGQFGVGFYSAFIVAKKVTVRTRAAGHAANEGVLWESEGEGSFNV 164          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.029e-34
Identity = 61/119 (51.26%), Postives = 89/119 (74.79%), Query Frame = 1
Query:  187 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            ++ET  FQAE+ QLLSL+I++ YSN+E+FLRELISN+SDA+DK+RFE+L  +S  +  PEL IR+  D   + +++ID+G+GM++ D++ NLGTIA SGT+ F+E L      D  +IG
Sbjct:    6 QSETLEFQAEVQQLLSLMIHSVYSNREVFLRELISNASDAIDKLRFEALQQESLYEDDPELKIRVEADPEARTVTVIDNGIGMSREDVIENLGTIAHSGTRRFLEQLTGDQHKDAQLIG 124          

HSP 2 Score: 40.4318 bits (93), Expect = 2.029e-34
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA++V V T+       E   W S   G++TV
Sbjct:  123 IGQFGVGFYSAFVVADRVEVYTRKAGAAAAEGVRWSSDGQGAYTV 167          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_MAGSA (Chaperone protein htpG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=htpG PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.029e-34
Identity = 60/113 (53.10%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  205 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIG 537
            FQAE+ +LL +++++ YSNKEIFLRELISN+SD+ D++R+ ++T+   LD   E  IR+VPDK    L+IID+G GM+  +L+ NLGTIA+SGT EF+  L   A  DVS+IG
Sbjct:    8 FQAEVGKLLDIVVHSLYSNKEIFLRELISNASDSCDRLRYGAITEPDLLDGDSEFRIRLVPDKDAGTLTIIDNGQGMSHDELIANLGTIAKSGTSEFLARLTGDAKKDVSLIG 120          

HSP 2 Score: 47.3654 bits (111), Expect = 2.029e-34
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTT-KHNDDEQYVWESQAGGSFTVT 661
            +GQFGVGFYSA++VAE+V VT+ K  + + + W S   G FTV+
Sbjct:  119 IGQFGVGFYSAFMVAEEVTVTSRKAGEAKGWKWVSDGKGEFTVS 162          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_SHEHH (Chaperone protein htpG OS=Shewanella halifaxensis (strain HAW-EB4) GN=htpG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.642e-34
Identity = 57/121 (47.11%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIG 537
            M + ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+E+LT+ +  +   EL +RI  DK    ++I D+G+GMT+  ++ +LGTIA+SGT EF + +      D  +IG
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYEALTNDALYEGDGELRVRISADKEKGTVTIEDNGIGMTRDGVIEHLGTIAKSGTAEFFKNMSGDESKDSQLIG 121          

HSP 2 Score: 52.373 bits (124), Expect = 2.642e-34
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYS+++VA++V V T+   H+ DE  +WES   G FTV
Sbjct:  120 IGQFGVGFYSSFIVADRVTVRTRAAGHSADEAVLWESAGEGDFTV 164          
The following BLAST results are available for this feature:
BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
HTPG_SHEB91.196e-3447.11Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB81.196e-3447.11Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB51.196e-3447.11Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_THIDA1.196e-3451.28Chaperone protein htpG OS=Thiobacillus denitrifica... [more]
HTPG_BURS31.196e-3453.85Chaperone protein htpG OS=Burkholderia sp. (strain... [more]
HTPG_WIGBR1.557e-3453.64Chaperone protein htpG OS=Wigglesworthia glossinid... [more]
HTPG_SHEFN1.557e-3447.11Chaperone protein htpG OS=Shewanella frigidimarina... [more]
HTPG_HALHL2.029e-3451.26Chaperone protein htpG OS=Halorhodospira halophila... [more]
HTPG_MAGSA2.029e-3453.10Chaperone protein htpG OS=Magnetospirillum magneti... [more]
HTPG_SHEHH2.642e-3447.11Chaperone protein htpG OS=Shewanella halifaxensis ... [more]

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Properties
Property NameValue
Genbank descriptionC34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG
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