FC931887

Overview
NameFC931887
Unique NameFC931887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPA (Chaperone protein htpG OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=htpG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.642e-34
Identity = 57/121 (47.11%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  181 MGETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIG 537
            M + ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+R+E+LT+ +  +   EL +RI  DK    ++I D+G+GMT+  ++ +LGTIA+SGT +F + L      D  +IG
Sbjct:    1 MSQQETHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNAADAADKLRYEALTNDNLYEGDGELRVRISADKEKGTVTIEDNGIGMTRDGVIEHLGTIAKSGTADFFKKLSGDESKDSQLIG 121          

HSP 2 Score: 52.373 bits (124), Expect = 2.642e-34
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYS+++VA++V V T+   H+ DE  +WES   G FTV
Sbjct:  120 IGQFGVGFYSSFIVADRVTVRTRAAGHSADEAVLWESAGEGDFTV 164          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_HELPY (Chaperone protein htpG OS=Helicobacter pylori GN=htpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.643e-34
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            + + FQ EINQLL L+I++ YSNKEIFLREL+SN+SDALDK+ +  LTD+          I +  D   K L+I D+G+GM K DL+ +LGTIA+SGTK F+ AL      D ++IG
Sbjct:    4 QEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKLKGLNTTPSIHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSALIG 120          

HSP 2 Score: 55.0694 bits (131), Expect = 2.643e-34
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH-NDDEQYVWESQAGGSFTVTRDVSGE 679
            +GQFGVGFYSA++VA K++V TK  N D+ Y W S   G F ++  V  E
Sbjct:  119 IGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE 168          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.440e-34
Identity = 62/117 (52.99%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA+DK+RF+SL D+S L+ + +L IR+  DK  + +++ D+G+GMT+ ++  NLGTIARSGTK F++ L      D  +IG
Sbjct:    8 ETLEFQAEVQQLLHLMIHSLYSNKDIFLRELISNASDAIDKLRFQSLQDESLLEGEGDLRIRVSVDKDARTITVADNGIGMTRDEVAENLGTIARSGTKAFLDQLTGDQQKDAKLIG 124          

HSP 2 Score: 40.817 bits (94), Expect = 3.440e-34
Identity = 21/52 (40.38%), Postives = 30/52 (57.69%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH---NDDEQYVWESQAGGSFTVTRDVSGE 679
            +GQFGVGFYSA++VAE V V T+      +    W S   G++T+  +   E
Sbjct:  123 IGQFGVGFYSAFVVAEHVTVHTRKAGLGAEHGVRWSSDGKGAYTLENEEVAE 174          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.461e-34
Identity = 46/71 (64.79%), Postives = 59/71 (83.10%), Query Frame = 1
Query:  325 ESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIG 537
            ESLTD SKLD+  E  I ++P+K ++ L+I+D+G+GMTKADL+NNLGTI +S TK FME LQAGAD+SMIG
Sbjct:    2 ESLTDPSKLDSGKEPHISLIPNKQDRTLTIVDTGIGMTKADLINNLGTITKSETKVFMEVLQAGADISMIG 72          

HSP 2 Score: 69.3218 bits (168), Expect = 3.461e-34
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRD 667
            +GQF VGFYSAY VAEKV V TKHN+DEQY WES   GSFT  R+
Sbjct:   71 IGQFSVGFYSAYSVAEKVTVITKHNNDEQYAWESSLRGSFTEYRE 115          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_BURTA (Chaperone protein htpG OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.483e-34
Identity = 62/117 (52.99%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIG 537
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L IR+  DKA + L+I D+G+GM++ + + NLGTIARSGTKEF   L      D ++IG
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTLTIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLSGDQQKDAALIG 120          

HSP 2 Score: 43.1282 bits (100), Expect = 4.483e-34
Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKHND---DEQYVWESQAGGSFTV 658
            +GQFGVGFYS ++VA+K+ V T+       E   WES   G F+V
Sbjct:  119 IGQFGVGFYSGFIVADKITVETRRAGLPASEGVRWESAGEGDFSV 163          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_ENTS8 (Chaperone protein htpG OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.839e-34
Identity = 57/117 (48.72%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIG 537
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L+     +   +L +R+  DK  + L+I D+G+GMT+ +++++LGTIA+SGTK F+E++      D  +IG
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSSPDLYEGDGDLRVRVSFDKDKRTLTIADNGIGMTRDEVIDHLGTIAKSGTKAFLESMGSDQAKDSQLIG 121          

HSP 2 Score: 50.447 bits (119), Expect = 5.839e-34
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH---NDDEQYVWESQAGGSFTVTRDVS 673
            +GQFGVGFYSA++VA+KV V T+    + DE   WES+  G +TV  D+S
Sbjct:  120 IGQFGVGFYSAFIVADKVTVRTRAAGVSADEAVFWESEGEGEYTVA-DIS 168          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_NITOC (Chaperone protein htpG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.603e-34
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIG 537
            ET  FQ E+ QLL+L+I+  YSNKEIFLRELISN +DA DK+RFE+LTD +  +    L IR+  DK  + L+I D+G+GM + ++V N+GTIA+SGT+ F+E+L      D  +IG
Sbjct:    8 ETLGFQTEVKQLLNLMIHALYSNKEIFLRELISNGADAADKLRFEALTDDALYEDDSALHIRLSYDKDKRTLTIADNGIGMGRQEVVENIGTIAKSGTRAFLESLSGDQAKDARLIG 124          

HSP 2 Score: 45.4394 bits (106), Expect = 7.603e-34
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH---NDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA+KV++ T+      +    WES   G +T+
Sbjct:  123 IGQFGVGFYSAFIVADKVVLETRRAGFGPEHGVRWESGGAGDYTI 167          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_SHIDS (Chaperone protein htpG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.605e-34
Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  193 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIG 537
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF SL++    +   EL +R+  DK  + L+I D+GVGMT+ +++++LGTIA+SGTK F+E+L      D  +IG
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRSLSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIG 121          

HSP 2 Score: 46.2098 bits (108), Expect = 7.605e-34
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTVTRDVSGE 679
            +GQFGVGFYSA++VA+KV V T+      +    WES   G +TV  D++ E
Sbjct:  120 IGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVA-DITKE 170          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_METRJ (Chaperone protein htpG OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=htpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.607e-34
Identity = 55/112 (49.11%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  181 MGET-ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQA 513
            M ET E   F AE+ +LL L+++  YS++EIFLREL++N++DA+D+ RFE+LT  +     P+  +RI PDK  + L++ D+G+GMTK DL  NLGTIARSGT+ F + L++
Sbjct:    1 MSETIERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADAMDRRRFEALTSAASA-LPPDAKVRIAPDKEARTLTVSDAGIGMTKEDLATNLGTIARSGTRAFSQTLES 111          

HSP 2 Score: 53.5286 bits (127), Expect = 7.607e-34
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTKH-NDDEQYVWESQAGGSFTVTRDVSGEP 682
            +GQFGVGFYSA++VA++V VT++    DE + W S+  GS+T+      EP
Sbjct:  121 IGQFGVGFYSAFMVADRVTVTSRRAGSDEAWTWASEGQGSYTLEPATRAEP 171          
BLAST of FC931887 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 9.902e-34
Identity = 61/120 (50.83%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  184 GETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRIVPDKANKALSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQA--GADVSMIG 537
            G+ E   FQ E+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RF++L+D S      +L +R+  DK ++ ++I D+GVGMT+ D++NNLGTIA+SGT EF   L      D  +IG
Sbjct:    5 GQMEKHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFKALSDNSLYGDDSDLHVRVSVDKDSRTITISDNGVGMTRDDVMNNLGTIAKSGTAEFFGQLSGDEAKDSKLIG 124          

HSP 2 Score: 43.5134 bits (101), Expect = 9.902e-34
Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 2
Query:  533 LGQFGVGFYSAYLVAEKVIVTTK---HNDDEQYVWESQAGGSFTV 658
            +GQFGVGFYSA++VA++V V T+     D     W SQ  G F +
Sbjct:  123 IGQFGVGFYSAFIVADEVTVRTRSALDKDARGVEWRSQGEGDFEI 167          
The following BLAST results are available for this feature:
BLAST of FC931887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
HTPG_SHEPA2.642e-3447.11Chaperone protein htpG OS=Shewanella pealeana (str... [more]
HTPG_HELPY2.643e-3450.43Chaperone protein htpG OS=Helicobacter pylori GN=h... [more]
HTPG_ALHEH3.440e-3452.99Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]
HS904_HUMAN3.461e-3464.79Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]
HTPG_BURTA4.483e-3452.99Chaperone protein htpG OS=Burkholderia thailandens... [more]
HTPG_ENTS85.839e-3448.72Chaperone protein htpG OS=Enterobacter sakazakii (... [more]
HTPG_NITOC7.603e-3451.28Chaperone protein htpG OS=Nitrosococcus oceani (st... [more]
HTPG_SHIDS7.605e-3452.14Chaperone protein htpG OS=Shigella dysenteriae ser... [more]
HTPG_METRJ7.607e-3449.11Chaperone protein htpG OS=Methylobacterium radioto... [more]
HTPG_IDILO9.902e-3450.83Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]

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Properties
Property NameValue
Genbank descriptionC34202C05EF PostHarveN Citrus clementina cDNA clone C34202C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931887 ID=FC931887; Name=FC931887; organism=Citrus clementina; type=EST; length=687bp
GATCGTCAAGTAGAAGCACTGTCTTGAGTTTTCCAATAGAAATCATCAAA
TCAGTTCGTACTCCTACTTCTTCAGCAAACAGCAAACGGCATTTGTATTC
GCTCGTTTTCGTTTTGCTCTGTTTCTTTTTGAACGTTTGGAGTTTTTGAG
TCTGGTCGGGAAACAATGGCTGACGTGCACATGGGAGAAACCGAGACCTT
CGCTTTTCAGGCTGAGATTAATCAGCTTTTAAGCTTGATCATCAATACTT
TTTACAGCAACAAAGAGATTTTCCTTCGTGAACTCATCAGCAACTCCTCT
GATGCGCTTGATAAGATCAGATTTGAGAGCTTAACCGACAAGAGCAAGCT
CGATGCTCAGCCAGAGCTTTTCATCAGAATTGTTCCTGACAAAGCCAACA
AGGCACTATCAATCATCGATAGCGGCGTTGGCATGACCAAAGCAGATTTG
GTGAATAACTTGGGAACAATTGCGAGGTCCGGAACAAAGGAGTTTATGGA
GGCATTACAGGCGGGTGCTGACGTAAGCATGATTGGGGCAGTTTGGTGTC
GGGTTCTACTCTGCTTATTTGGTGGCGGAGAAGGTTATTGTGACGACTAA
ACACAATGATGATGAACAATACGTTTGGGAGTCGCAGGCCGGTGGATCTT
TCACTGTTACTAGAGATGTTAGCGGTGAGCCTCTGGG
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