FC931899

Overview
NameFC931899
Unique NameFC931899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15408 contig Ccv1_Contig15408:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  311 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQDWEYK-FMSKYVKVGSIKSTVPVTDGA 649
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY    GKD++R +AKMS    DLT D +GL   ELEAL +   K + +KY  VG     +   DG+
Sbjct:   42 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGS 153          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 42/114 (36.84%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  287 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            EE      P ++  + + E+L+QYDGS + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA     +   +D   D+S L   ++E++++WE +F  KY  VG +
Sbjct:   88 EESPATSLPRMKKRDFSLEQLRQYDGSRNPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 200          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  299 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA     +   KD   D+S L   + E L DWE +F  KY  VG +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  299 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA     +   KD   D+S L   + E L DWE +F  KY  VG +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 41/114 (35.96%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  287 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA     +   +D   D+S L   ++E++++WE +F  KY  VG +
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 194          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 41/114 (35.96%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  287 EEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            EE      P ++  + + E+L+QYDG+ + + +L+A+  +++DV++   FYGP GPY +FAG+DASR LA     +   +D   D+S L   ++E++++WE +F  KY  VG +
Sbjct:   82 EESPAATLPRMKKRDFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRL 194          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  176 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            SP     +   L+ +Y +L G         ++ + +  E   P  P ++  + T E+L+ YDG    + +LMA+  +++DV+++  FYGP GPY +FAG+DASR LA     +   +D   D+S L   + E L+DWE +F  KY  VG +
Sbjct:   28 SPLNLSLLGLCLFLLYQILRG---------ERPAAQPGEAGPPPLPKMKRRDFTLEQLRPYDGVRDPR-ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVGKL 168          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: CB5D2_XENTR (Cytochrome b5 domain-containing protein 2 OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  308 PPPVQLGE---ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            P   +L E   +++EEL  YDG      + +AI  Q++DV +    YGPGG Y+ FAGKDASRA     F EK L  D++ L P ++  L +W   +   Y+ +G +
Sbjct:   36 PQQCELSEGRLMSKEELSVYDGGPGSSGIYLAILGQVFDVHKGSKHYGPGGSYSFFAGKDASRAYMTGDFTEKGLVDDVTELSPLQMLHLHNWLSFYQQNYITIGKL 142          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  332 ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            +T+E+L  Y+G  + K L +AI  Q++DV + R  YGPGG Y  F GKDASRA     F E  L+ D+S     ++ AL DW   +   Y  VG +
Sbjct:   54 LTKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVGKL 149          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: DAP1_SCHPO (Cytochrome P450 regulator dap1 OS=Schizosaccharomyces pombe GN=dap1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  266 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEK-------DLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 625
            ++  + +    EP  P  +  + T  ELK+Y+GS +   + +AIK  +Y+V+    FYGP GPY+ FAG DASR LAK SF ++       +   D S L   E +AL DW+  F  KY  VG + S
Sbjct:   23 RKNEKSFIASEEPKQP--EWRDYTPAELKEYNGSKNSL-VFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLIS 146          
The following BLAST results are available for this feature:
BLAST of FC931899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NENF_HUMAN9.099e-1742.11Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
PGRC2_HUMAN2.647e-1636.84Membrane-associated progesterone receptor componen... [more]
PGRC1_PONAB2.647e-1642.34Membrane-associated progesterone receptor componen... [more]
PGRC1_HUMAN2.647e-1642.34Membrane-associated progesterone receptor componen... [more]
PGRC2_RAT4.516e-1635.96Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE4.516e-1635.96Membrane-associated progesterone receptor componen... [more]
PGRC1_CHICK5.898e-1633.11Membrane-associated progesterone receptor componen... [more]
CB5D2_XENTR2.927e-1537.38Cytochrome b5 domain-containing protein 2 OS=Xenop... [more]
CB5D2_DANRE6.521e-1540.63Cytochrome b5 domain-containing protein 2 OS=Danio... [more]
DAP1_SCHPO2.478e-1437.80Cytochrome P450 regulator dap1 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC34202D05EF PostHarveN Citrus clementina cDNA clone C34202D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931899 ID=FC931899; Name=FC931899; organism=Citrus clementina; type=EST; length=659bp
GAAACAGCGAGACTTTAACAGTAGCAACAATTTTCCGCCAATTTAAGACC
AAACCCCTGCAGACTCTGAGTGGATAATACCAAAGGGGACCGGGGAAAAA
AAAATCTTGACCTCCGTGATGGCTCTGCAACTATGGGAGACTCTAAAGGA
GGCGATAACAGCGTACACGGGGCTCTCCCCGGCGGCGTTTTTTACAGTTG
TTGCGTTGCTGTGGGCCATATACTATGTTCTGTCGGGAATGTTTGGTTCG
TCCGATAATCATCATCAGCAGAGATCGAGGGAGTACGAGGAACAGATGGA
GCCTCTGCCACCGCCTGTTCAGCTAGGCGAGATTACCGAGGAGGAGCTCA
AACAGTACGATGGCTCCGATTCCAAAAAGCCCCTTCTCATGGCCATCAAG
AGCCAGATCTACGATGTCTCTCAGAGCAGGATGTTTTATGGACCTGGTGG
GCCATATGCGTTGTTTGCTGGAAAGGATGCTAGCAGGGCCCTTGCCAAGA
TGTCTTTTGGGGAAAAAGATTTAACTGGTGATATCTCTGGTCTTGGTCCA
TTTGAGTTGGAGGCATTGCAGGACTGGGAGTATAAGTTCATGAGCAAGTA
TGTTAAGGTTGGATCTATCAAGTCGACAGTTCCAGTAACAGATGGAGCCT
CCTCTGGTG
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