FC931906

Overview
NameFC931906
Unique NameFC931906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:5..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 64/179 (35.75%), Postives = 103/179 (57.54%), Query Frame = 2
Query:  128 RKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            RK ++ G+ +  LNE L R+L    Y   +   TP+ T++I+ A     V+G KG  I+ +  V+++ F      +++   +V N+ L A   A  +   L+ G+  RRA    L  IM +GA+G E+++SGKL +QR ++ KF  GY+  SG+P  E +D A+ HVLL+ G+ G+KVR
Sbjct:    6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVR 182          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 68/180 (37.78%), Postives = 101/180 (56.11%), Query Frame = 2
Query:  125 KRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            +RKFVADGV    +   L  EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R LT  +   +      +E+  ++V+N  L A   AE L   L  G   R+A    LR IM+SGA GCEV++SGKL   R +  KF +GY+  SG PVN  +D      + + GV+G++VR
Sbjct:    4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVR 181          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 59/183 (32.24%), Postives = 111/183 (60.66%), Query Frame = 2
Query:  116 ISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            ++ +++F+ DG+   +++E    EL   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T+ ++ RF   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +DS V   +++ G +G++V+
Sbjct:    1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVK 181          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 63/180 (35.00%), Postives = 105/180 (58.33%), Query Frame = 2
Query:  125 KRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            ++KFVADGV    + + L +EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R+LT+ +   +      VE+  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P    ++      + + G++G++V+
Sbjct:    4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVK 181          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_NATPD (30S ribosomal protein S3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 59/183 (32.24%), Postives = 111/183 (60.66%), Query Frame = 2
Query:  116 ISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            ++ + +F+ DG+   +++E  + EL+  GY G+EV  TPM T+I+++A +   V+G+ G+ IR++T+ +++ F   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+I+SGK+   R++  KF  GY+  +G+P    +DS V   +++ G +G++V+
Sbjct:    1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVK 181          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 62/180 (34.44%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  125 KRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            ++ FV +G+    ++E L +EL   GY G++V+VTPM T +++ A R   V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++      V L+ GVLG+ VR
Sbjct:    3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVR 180          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 58/180 (32.22%), Postives = 105/180 (58.33%), Query Frame = 2
Query:  125 KRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            +RKF+A+G   A + + LT+EL   G+ G+++  TP+ T++ I A +   V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++V+
Sbjct:    4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVK 181          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 61/180 (33.89%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  125 KRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            ++KF+ DGV    + + LT+EL   GY G+++  TP+ T++ I A +   V+G+ G+++R+LT  +   +      VE+  ++V N    A   AE L   L  G   R+A    +R IMESGA GCEVIV+GKL   R+++ KF +GY+   G+P    ++      + + G +G++V+
Sbjct:    4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  125 KRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCLVGILM 688
            +R FV + V    ++E   +EL++ GY   ++R TP+ T+III A +   V+G +G RIRELT  + K F   +  +++  + V N  L A   A+ +   L  GL  RR  +  +R +M +GAKG  VI+SGKL  +RA++ KF  GYM   G+P  E +D        + GV+G+ V+     +L+
Sbjct:    3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIMRPDVLL 188          
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 59/180 (32.78%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  125 KRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVR 664
            ++KFV DG   A ++E   ++L+  GY G+++  TPM T+I + A +   V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D      + + G LG KVR
Sbjct:    4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVR 181          
The following BLAST results are available for this feature:
BLAST of FC931906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_THEPD2.148e-2535.7530S ribosomal protein S3P OS=Thermofilum pendens (... [more]
RS3_METHJ2.805e-2537.7830S ribosomal protein S3P OS=Methanospirillum hung... [more]
RS3_HALMA4.785e-2532.2430S ribosomal protein S3P OS=Haloarcula marismortu... [more]
RS3_METLZ1.066e-2435.0030S ribosomal protein S3P OS=Methanocorpusculum la... [more]
RS3_NATPD1.392e-2432.2430S ribosomal protein S3P OS=Natronomonas pharaoni... [more]
RS3_METTH2.375e-2434.4430S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_METB62.375e-2432.2230S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_METMJ3.102e-2433.8930S ribosomal protein S3P OS=Methanoculleus marisn... [more]
RS3_METJA4.051e-2435.1130S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METBU5.291e-2432.7830S ribosomal protein S3P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionC34202D12EF PostHarveN Citrus clementina cDNA clone C34202D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931906 ID=FC931906; Name=FC931906; organism=Citrus clementina; type=EST; length=718bp
GCTAAACTAAACCTAGGGTTTGCAGGGAGCTAGCTGCGCACACAAGCCAC
CTCATTGAGATCATCAGATCCCTATCTCTGTAATCGAATCAACAGAAAGC
AAAATGGCGACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGT
GTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACG
GTTATCCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATC
ATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAAT
TAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATA
GCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATT
GCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCG
CAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGG
GATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCA
ATGAAGTTTGAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGA
ATATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTG
GTATTAAGGTCAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGTCC
TACTACCCCTCTACCTGA
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