FC931910

Overview
NameFC931910
Unique NameFC931910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/80 (42.50%), Postives = 41/80 (51.25%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 608
            CD C    A+LFC AD A LC  CD++VH  N L+ +HVR  +        CD C N P    C  D   LC +CD  VH
Sbjct:    9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQI--------CDNCGNEPVSVRCFTDNLILCQECDWDVH 80          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 34/90 (37.78%), Postives = 46/90 (51.11%), Query Frame = 3
Query:  366 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 635
            +C+ C++  A+++C AD A LC +CD KVH  N L+ RH+R  L        CD C+N P    C      LC  C+   H GG   H R
Sbjct:   13 VCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVL--------CDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHRR 94          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 608
            CD C+S  A +FC  D A LC +CD ++H      +RH RV +        C++CE APA   C+ D ++LC+ CD  +H
Sbjct:   22 CDACKSVTAAVFCRVDSAFLCIACDTRIHS----FTRHERVWV--------CEVCEQAPAAVTCKADAAALCVSCDADIH 89          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 35/91 (38.46%), Postives = 42/91 (46.15%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH--VGGKRTHGR 635
            C+ C    A+LFC AD A LC  CD+ VH  N L+ +HVR  +        CD C   P    C  D   LC +CD  VH       TH R
Sbjct:   12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQI--------CDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCSSSATHER 94          
The following BLAST results are available for this feature:
BLAST of FC931910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COL15_ARATH5.703e-1242.50Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COLX_ARATH1.271e-1137.78Putative zinc finger protein At1g68190 OS=Arabidop... [more]
COL5_ARATH1.659e-1138.75Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL14_ARATH6.305e-1138.46Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34202E04EF PostHarveN Citrus clementina cDNA clone C34202E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931910 ID=FC931910; Name=FC931910; organism=Citrus clementina; type=EST; length=693bp
GATTTGTCTCCCTTCATTCACTGCTCTCTCTCTCTCTCTCTCTCTTTCTC
CATCCAACACCAACAGCACCCCCCATTCAACGCGCAACAAACATATATTT
AAGCTCCAGTTTTCTTTCTTTTTTTTTCTTTTTTTTTATAATACGTAAAA
TTTGCTTTCAGGTTAGTTAACTCAATCGAGCTCTCTAATCTAATCTGTTT
CTGAACTTGTTGGATTCATCATCATCATCTTTGCACTAGTTTGGTTTCGC
CAGTGAAAAATACGATGTCGTTTTCGAGACAGAGATAGCTCGAATGAAAA
AGTAGAGAGATTAGAATAGATAGATTGATCGAACCAAAAGAAAAAGAAAC
AGAAAAATGCGAACGCTTTGCGACGTGTGTGAAAGCGCAGCTGCGATTCT
TTTCTGCGCTGCTGATGAGGCCGCTCTTTGCCGCTCTTGCGACGAAAAGG
TCCATATGTGCAATAAGCTTGCTAGTCGTCATGTGAGGGTAGGGCTTGCT
AACCCCAGTGATGTCCCACGATGTGACATCTGTGAAAATGCTCCTGCTTT
CTTTTACTGTGAGATAGATGGTAGTTCCCTGTGCTTGCAATGCGATATGA
CTGTTCATGTCGGTGGTAAAAGAACCCATGGGAGATATCTCCTTTTGAGG
CAGAGAGTTGAGTTTCCAGGGGGACAGGCTGGTCGTTTGGAGG
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