FC931911

Overview
NameFC931911
Unique NameFC931911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.976e-51
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 1
Query:  244 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRGCDSRPK 693
            GIA  RL +ERKAWRK+HP G VA P +  DG++NLM  EC IPGK GT WEGG F L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++PN  DPAQ + Y +F QD  EY++   ++ K
Sbjct:    3 GIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAK 153          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.499e-51
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 1
Query:  244 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+ Q+ +GIQ+LL++PN  +PAQ + Y ++ Q+  EY++
Sbjct:    3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEK 146          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.186e-50
Identity = 85/144 (59.03%), Postives = 112/144 (77.78%), Query Frame = 1
Query:  244 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            GIA GRL EERK WRK+HP GF+AKP +  DG++NL  WEC IPG+  T WEGG + + + F +D+PS PPKCKF    FHPNVYPSGTVCLS+L+E+  W+P+I++KQ+L+GIQDLL+ PN  DPAQ + YQ++ Q+ AEY++
Sbjct:    3 GIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEK 146          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.226e-49
Identity = 88/139 (63.31%), Postives = 108/139 (77.70%), Query Frame = 1
Query:  259 RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            RL EERK WRK+HP GF AKP  K DGS++L  WE  IPGK GT+W GG +P+T+ +  +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QDLLD PNP  PAQ   ++ F ++ AEY +
Sbjct:    8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDK 146          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.091e-49
Identity = 87/143 (60.84%), Postives = 111/143 (77.62%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            + + RL EERK WR++HP GF AKP ++ DG ++LM W+  IPGK  T WEGG + LT+ F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQDLLD PN A PAQT+ Y +F +D  EY++
Sbjct:    4 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEK 146          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F L+L FSEDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP  PA ++  ++F +   EY R
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNR 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+M+W  +I G  GT +E G F LT+ F+E+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSEN----NIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+M+W  +I G  GT +E G F LT+ F+E+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAPSEN----NIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  + + P G    P+      N+M+W  +I G   T W+GG F L+L FSEDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP  PA ++  ++F ++  EY R
Sbjct:    5 ARKRLMRDFKRLQHDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F L+L FSEDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP  PA ++  +++ +   EY R
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNR 139          
The following BLAST results are available for this feature:
BLAST of FC931911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
UBC9_PAGMA4.976e-5162.25SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_MESAU6.499e-5161.81SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC9_CAEEL7.186e-5059.03SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBC9_YEAST1.226e-4963.31SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC9_SCHPO2.091e-4960.84SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC2_ARATH2.487e-2641.84Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBE2A_MOUSE3.248e-2641.84Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.248e-2641.84Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_MEDSA3.248e-2641.84Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC1_ARATH5.540e-2641.13Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202E05EF PostHarveN Citrus clementina cDNA clone C34202E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931911 ID=FC931911; Name=FC931911; organism=Citrus clementina; type=EST; length=707bp
GCCGGGGTTCGTCTTCGAGTCGGCGTCGTGAAATATAGAAGCATGGAAGT
TACGTAAGCTTCAATCTTCCGTTTAAGAATATCAGAAGTCAACATCCCGG
GCAGCAAGCACGTACACGGTACTCGGTACTCGGTACTCGGTACTCGGTAC
TCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGTTAGTTA
TACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTGGTATTG
CTCGCGGCCGTCTCACAGAGGAGCGAAAAGCCTGGCGCAAGAATCATCCC
CACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTGAATTTGAT
GATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTGGGAAGGTG
GCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCAGCAAACCC
CCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTCTACCCTTC
TGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTGGAGACCTG
CCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGCTGGATCAA
CCCAATCCTGCTGATCCAGCACAAACTGATGGATACCAGCTTTTCATCCA
GGATCCTGCCGAGTACAAGAGAGGGTGCGACAGCAGGCCAAAGCATATCC
ACCTGNT
back to top