FC931911

Overview
NameFC931911
Unique NameFC931911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  373 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL   N W P IT+K  L+ +Q LL  P P DP   +  Q +++D   + +
Sbjct:   41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  322 ETKDGSVNLMIWEC-IIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG----------WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            E +D S N+  W   ++     + + GG+F   + F ED+P  PP+ +F    +HPNVY  G +C+SIL++             W P  TV+ +L+ I  LL+ PN   PA  D    + ++P +YK+
Sbjct:   32 ELEDDS-NIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQ 158          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 41/112 (36.61%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  343 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 645
            +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  D   ++
Sbjct:   37 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 148          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 41/112 (36.61%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  343 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 645
            +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  D   ++
Sbjct:   37 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 148          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 41/112 (36.61%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  343 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 645
            +L  WE  I G   T +EGGYF   + F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  D   +F
Sbjct:   37 DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 41/112 (36.61%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  343 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 645
            +L  WE  I G   T +EGGYF   + F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  D   +F
Sbjct:   37 DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 41/112 (36.61%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  343 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 645
            +L  WE  I G   T +EGGYF   + F  DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+ +  LL++PN   PA  D   +F
Sbjct:   37 DLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 54/149 (36.24%), Postives = 71/149 (47.65%), Query Frame = 1
Query:  238 SGGIARG----RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            SGG ARG    RL +E      +   G  A PE    S NL  W   I G  GT +E   + L+L F   YP   P  KF    +HPNV   G +CL IL +   W     V+ IL+ IQ LL +PN   P  T   +L+ ++P  +K+
Sbjct:   23 SGGAARGPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDK--WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKK 164          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 54/149 (36.24%), Postives = 71/149 (47.65%), Query Frame = 1
Query:  238 SGGIARG----RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            SGG ARG    RL +E      +   G  A PE    S NL  W   I G  GT +E   + L+L F   YP   P  KF    +HPNV   G +CL IL +   W     V+ IL+ IQ LL +PN   P  T   +L+ ++P  +K+
Sbjct:   23 SGGAARGPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDK--WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKK 164          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  286 RKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK 669
            ++N+  G  AKP ++D    +M WE  I G   + W+G  F LT++F+ +Y   PP  KF    FHPNV P +G  C+  L+    W    T+  IL+ +Q +L  P   +P   +  ++ ++D + Y+
Sbjct:   17 KENNYKGITAKPVSED----MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYR 141          
The following BLAST results are available for this feature:
BLAST of FC931911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
UBC1_YEAST2.184e-1437.62Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC3_YEAST2.852e-1432.03Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UB2R1_MOUSE2.852e-1436.61Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN2.852e-1436.61Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UB2R2_RABIT3.725e-1436.61Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE3.725e-1436.61Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN3.725e-1436.61Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBE2C_MACFA4.865e-1436.24Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN4.865e-1436.24Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBE2U_HUMAN6.354e-1431.78Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34202E05EF PostHarveN Citrus clementina cDNA clone C34202E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931911 ID=FC931911; Name=FC931911; organism=Citrus clementina; type=EST; length=707bp
GCCGGGGTTCGTCTTCGAGTCGGCGTCGTGAAATATAGAAGCATGGAAGT
TACGTAAGCTTCAATCTTCCGTTTAAGAATATCAGAAGTCAACATCCCGG
GCAGCAAGCACGTACACGGTACTCGGTACTCGGTACTCGGTACTCGGTAC
TCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGTTAGTTA
TACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTGGTATTG
CTCGCGGCCGTCTCACAGAGGAGCGAAAAGCCTGGCGCAAGAATCATCCC
CACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTGAATTTGAT
GATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTGGGAAGGTG
GCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCAGCAAACCC
CCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTCTACCCTTC
TGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTGGAGACCTG
CCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGCTGGATCAA
CCCAATCCTGCTGATCCAGCACAAACTGATGGATACCAGCTTTTCATCCA
GGATCCTGCCGAGTACAAGAGAGGGTGCGACAGCAGGCCAAAGCATATCC
ACCTGNT
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