FC931911

Overview
NameFC931911
Unique NameFC931911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15410 contig Ccv1_Contig15410:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.234e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            A+ RL  + K  +K+ P G    P+      N+M W  +I G   T W+GG F LTL+F+EDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  +L  IQ LL  PNP  PA  +  +LF ++  EY R
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDN----NIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNR 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 57/141 (40.43%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+ +W  +I G   T W+GG F LTL F+EDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP  PA ++  +++ ++  EY R
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPHDN----NITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNR 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FSE+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 61/157 (38.85%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  235 MSGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            MS  +A  RL +E K   +N P G  A P  +D   +   W+C+I G  GT +EGG +P TL F  DYP  PP  KF   FFHPNVY  GTVC+SIL           +    W P  +V++IL+ +  +L +PN    A  D  +++ +D  EY R
Sbjct:    1 MSKAMALRRLMKEYKELTENGPDGITAGPSNED---DFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCR 154          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 61/141 (43.26%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+E+YP+KPP  KF    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP  PA +   QL+ ++  EY++
Sbjct:    5 SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL--QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            A+ RL  + K    + P G    P       N+M+W  +I G   T +E G F LTL F++ YP+KPP  +F    FHPN+Y +G +CL IL   N W P   V  IL  +Q LL+ PNPA PA  D  QLF ++  EY+R
Sbjct:    5 AKRRLIRDFKRLTSDAPIGISGSPNPD----NIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDIL--QNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYER 139          
The following BLAST results are available for this feature:
BLAST of FC931911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
UBC3_ARATH1.234e-2541.84Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_WHEAT2.750e-2540.43Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBE2B_RAT4.690e-2541.84Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT4.690e-2541.84Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE4.690e-2541.84Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN4.690e-2541.84Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN4.690e-2541.84Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC7_SCHPO6.125e-2538.85Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC1_CAEEL3.040e-2443.26Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_CRYNE6.773e-2441.13Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC34202E05EF PostHarveN Citrus clementina cDNA clone C34202E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931911 ID=FC931911; Name=FC931911; organism=Citrus clementina; type=EST; length=707bp
GCCGGGGTTCGTCTTCGAGTCGGCGTCGTGAAATATAGAAGCATGGAAGT
TACGTAAGCTTCAATCTTCCGTTTAAGAATATCAGAAGTCAACATCCCGG
GCAGCAAGCACGTACACGGTACTCGGTACTCGGTACTCGGTACTCGGTAC
TCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGTTAGTTA
TACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTGGTATTG
CTCGCGGCCGTCTCACAGAGGAGCGAAAAGCCTGGCGCAAGAATCATCCC
CACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTGAATTTGAT
GATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTGGGAAGGTG
GCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCAGCAAACCC
CCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTCTACCCTTC
TGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTGGAGACCTG
CCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGCTGGATCAA
CCCAATCCTGCTGATCCAGCACAAACTGATGGATACCAGCTTTTCATCCA
GGATCCTGCCGAGTACAAGAGAGGGTGCGACAGCAGGCCAAAGCATATCC
ACCTGNT
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