FC931911

Overview
NameFC931911
Unique NameFC931911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15410 contig Ccv1_Contig15410:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 59/139 (42.45%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F EDYP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY 137          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G    P       N+MIW  +I G   T +E G F LT+ F+E+YP+KPP  +F    FHPNVY  G +CL IL   N W P   V  IL  IQ LL  PNP  PA +   QL+ ++  EY++
Sbjct:    5 ARRRLMRDFKRLQEDPPTGVSGAPTDN----NIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDIL--QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 61/141 (43.26%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G  A P     S N+M+W  +I G   T +E G F L L F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN A PA  +  QL  ++  EY R
Sbjct:    5 ARRRLMRDFKRMQQDPPAGVSASPV----SDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVR 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 59/139 (42.45%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            AR RL  + K  +++ P G  A P       N+MIW  +I G   T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPD----NVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQY 137          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 58/139 (41.73%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY 137          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 58/139 (41.73%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY 137          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 56/141 (39.72%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  + + P G    P       N+++W+ +I G   + WEG  F L+L FSE+YP+  P  KF    FHPNVY  G++CL IL   N W P   +  IL  IQ LL  PNP  PA ++  +LF ++  EY R
Sbjct:    5 ARRRLMRDFKRLQSDPPAGISGAPLEN----NILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDIL--QNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNR 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 58/141 (41.13%), Postives = 71/141 (50.35%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            ++ RL  + K    + P G    P       NLMIW  +I G   T +E G F L L F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL  PNP  PA  +   L+ ++  EY R
Sbjct:    5 SKKRLIRDFKRLSTDPPGGISGAPCAD----NLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDIL--QNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVR 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 54/141 (38.30%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  +++ P G  A P       N++ W  +I G   T +E G F + L F E YP+KPP  KF    FHPNVY SG +CL IL   N W P   V  IL  +Q LL+ PN + PA  +   L+     +Y++
Sbjct:    5 ARRRLMRDFKRMQQDPPQGVSASPVAD----NVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDIL--QNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 56/139 (40.29%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L ++F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN + PA  +   L+  +  EY
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVAD----NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEY 137          
The following BLAST results are available for this feature:
BLAST of FC931911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
UBC2_CANGA6.773e-2442.45Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBCD6_DROME1.509e-2341.13Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_SCHPO1.509e-2343.26Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_KLULA1.509e-2342.45Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_YEAST2.574e-2341.73Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO2.574e-2341.73Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_DICDI9.780e-2339.72Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_USTMA1.081e-2141.13Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_YARLI1.412e-2138.30Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_EMENI1.412e-2140.29Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202E05EF PostHarveN Citrus clementina cDNA clone C34202E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931911 ID=FC931911; Name=FC931911; organism=Citrus clementina; type=EST; length=707bp
GCCGGGGTTCGTCTTCGAGTCGGCGTCGTGAAATATAGAAGCATGGAAGT
TACGTAAGCTTCAATCTTCCGTTTAAGAATATCAGAAGTCAACATCCCGG
GCAGCAAGCACGTACACGGTACTCGGTACTCGGTACTCGGTACTCGGTAC
TCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGTTAGTTA
TACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTGGTATTG
CTCGCGGCCGTCTCACAGAGGAGCGAAAAGCCTGGCGCAAGAATCATCCC
CACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTGAATTTGAT
GATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTGGGAAGGTG
GCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCAGCAAACCC
CCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTCTACCCTTC
TGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTGGAGACCTG
CCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGCTGGATCAA
CCCAATCCTGCTGATCCAGCACAAACTGATGGATACCAGCTTTTCATCCA
GGATCCTGCCGAGTACAAGAGAGGGTGCGACAGCAGGCCAAAGCATATCC
ACCTGNT
back to top