FC931911

Overview
NameFC931911
Unique NameFC931911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15410 contig Ccv1_Contig15410:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 56/139 (40.29%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L ++F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN + PA  +   L+  +  EY
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVAD----NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEY 137          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L + F E YP+KPP+ KF    FHPNVY +G +CL IL   N W P   V  +L  IQ LL+ PN   PA  +   L+  +  EY +
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPD----NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL--QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 56/139 (40.29%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            A+ RL  + K  +++ P G  A P       N+M W  +I G   T +E G F L L F E YP+KPP  KF    FHPNVY SG +CL IL   N W P   V  IL  IQ LL+ PN + PA  +   L+    ++Y
Sbjct:    5 AKRRLMRDFKRMQQDAPSGVSASPLPD----NVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDIL--QNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQY 137          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 55/139 (39.57%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L + F E YP+KPP+ KF    FHPNVY +G +CL IL   N W P   V  +L  IQ LL+ PN   PA  +   L+  +  EY
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPIPD----NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDIL--QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREY 137          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 55/132 (41.67%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 645
            AR RL  + K  +++ P G  A P       N+M W  +I G + T +E G F L L F E YP+KPP+ KF    FHPNVY SG +CL IL   N W P   V  IL  +Q LL+ PN + PA  +   L+
Sbjct:    5 ARRRLMRDFKRMQQDPPSGVSASPLPD----NVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDIL--QNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLY 130          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 54/141 (38.30%), Postives = 71/141 (50.35%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L ++F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  +L  IQ LL+ PN    A  +   L+  +  EY +
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPD----NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDIL--QNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHK 139          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK 669
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G + + + GG F +T++F  DYP KPPK  F    FHPNV  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   +   ++  D A+Y+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 52/152 (34.21%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  250 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F   L F +DYP  PPK  F     HPN+YP+G VC+SIL+            +  W P  +V++IL+ +  +L +PN    A  D   L+  +  E++R
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFER 153          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK 669
            +A  R+ +E K  +K+ P    A P  +D    +  W+  I G T + + GG F ++++F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   +   ++  D A+Y+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAED----MFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 57/149 (38.26%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  262 LTEERKAWRKNHPHGF-VAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN---------EDNG--WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            L ++ K  +KN P GF V   + K    ++  WE +I G   T +EGG+F  TL F +DYP  PPK KF    +HPNV+P+G VC+SIL+         ED G  W P  + + IL+ +  +L  PN   PA  D  + F ++P E+K+
Sbjct:   10 LRKQLKEIQKNPPQGFSVGLVDDK----SIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKK 154          
The following BLAST results are available for this feature:
BLAST of FC931911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
UBC2_ASPFU1.412e-2140.29Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_NECHA1.844e-2139.01Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_DEBHA2.409e-2140.29Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_TRIHA3.146e-2139.57Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_CANAL4.109e-2141.67Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_NEUCR1.195e-2038.30Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC28_ARATH1.561e-2036.88Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC7_YEAST2.663e-2034.21Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC4_SOLLC2.663e-2036.17Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC15_SCHPO2.663e-2038.26Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionC34202E05EF PostHarveN Citrus clementina cDNA clone C34202E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931911 ID=FC931911; Name=FC931911; organism=Citrus clementina; type=EST; length=707bp
GCCGGGGTTCGTCTTCGAGTCGGCGTCGTGAAATATAGAAGCATGGAAGT
TACGTAAGCTTCAATCTTCCGTTTAAGAATATCAGAAGTCAACATCCCGG
GCAGCAAGCACGTACACGGTACTCGGTACTCGGTACTCGGTACTCGGTAC
TCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGTTAGTTA
TACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTGGTATTG
CTCGCGGCCGTCTCACAGAGGAGCGAAAAGCCTGGCGCAAGAATCATCCC
CACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTGAATTTGAT
GATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTGGGAAGGTG
GCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCAGCAAACCC
CCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTCTACCCTTC
TGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTGGAGACCTG
CCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGCTGGATCAA
CCCAATCCTGCTGATCCAGCACAAACTGATGGATACCAGCTTTTCATCCA
GGATCCTGCCGAGTACAAGAGAGGGTGCGACAGCAGGCCAAAGCATATCC
ACCTGNT
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