FC931911

Overview
NameFC931911
Unique NameFC931911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK 669
            +A  R+  E     K+ P    A P   D    L  W+  I G   + + GG F L+++F  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  LL  PNP DP   +   ++  D + Y+
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDD----LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYE 135          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT+ F  +YP KPPK +F    +HPNV  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  Q++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQ--WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNR 136          
The following BLAST results are available for this feature:
BLAST of FC931911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
UB2D3_MACFA7.253e-1833.80Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN7.253e-1833.80Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_XENLA7.253e-1838.68Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT7.253e-1838.68Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE7.253e-1838.68Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN7.253e-1838.68Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN7.253e-1838.68Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC4_SCHPO9.472e-1834.04Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UB2D2_PIG9.472e-1838.68Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
U2D2B_RAT9.472e-1839.62Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC34202E05EF PostHarveN Citrus clementina cDNA clone C34202E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931911 ID=FC931911; Name=FC931911; organism=Citrus clementina; type=EST; length=707bp
GCCGGGGTTCGTCTTCGAGTCGGCGTCGTGAAATATAGAAGCATGGAAGT
TACGTAAGCTTCAATCTTCCGTTTAAGAATATCAGAAGTCAACATCCCGG
GCAGCAAGCACGTACACGGTACTCGGTACTCGGTACTCGGTACTCGGTAC
TCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGTTAGTTA
TACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTGGTATTG
CTCGCGGCCGTCTCACAGAGGAGCGAAAAGCCTGGCGCAAGAATCATCCC
CACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTGAATTTGAT
GATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTGGGAAGGTG
GCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCAGCAAACCC
CCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTCTACCCTTC
TGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTGGAGACCTG
CCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGCTGGATCAA
CCCAATCCTGCTGATCCAGCACAAACTGATGGATACCAGCTTTTCATCCA
GGATCCTGCCGAGTACAAGAGAGGGTGCGACAGCAGGCCAAAGCATATCC
ACCTGNT
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