FC931911

Overview
NameFC931911
Unique NameFC931911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  355 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            W+  I G   + ++GG F LT+ F  +YP KPPK +F    +HPNV  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  Q++  D  +Y R
Sbjct:   33 WQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQ--WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  259 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK 669
            R+ +E     ++ P    A P   D    L  W+  I G + + + GG F L+++F  DYP KPPK  F    +HPN+  SG +CL IL +   W PA+T+ ++L+ I  LL   NP DP   +  Q++  D A+Y+
Sbjct:    6 RIAKELSDLGRDPPASCSAGPVGDD----LYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYE 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  343 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG------WRPAITVKQILVGIQDLLDQPNPADPAQTD---GYQLFIQDPAEYKRGCDSRPKHI 699
            N+  W+ I+ G   T +EGG F   + F  +YP  PPK  F    +HPN+YP G +C+SIL+ DN       W PA  +  IL+ +  LL++PNP  PA  D    Y+ ++     YK   +S P  +
Sbjct:   29 NITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYV-----YKEDLESYPMEV 151          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 48/140 (34.29%), Postives = 75/140 (53.57%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 666
            +A  R+ +E +   ++ P    A P   D    L  W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKY 134          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  343 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            +L  W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D   Y +
Sbjct:   29 DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN------GWRPAITVKQILVGIQDLLDQPNPADPAQTD 630
            ++R  LTE R        H  V+  E      NL  W+ I+ G + T +EGG F   + F  +YP +PPK  F    +HPN+YP G +C+SIL+ DN       W PA  ++ +L+ +  L ++PN   PA  D
Sbjct:    2 VSRFLLTEYRNLTENPSEHFKVSVNEN-----NLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVD 130          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK 669
            +A  R+ +E     ++ P    A P  +D    L  W+  I G + + + GG F L ++F  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP DP   +   ++    A+Y+
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGED----LFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYE 135          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  259 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK 669
            R+ +E     ++ P    A P  +D    L  W+  I G   + + GG F L ++F  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP +P   +   ++  D A Y+
Sbjct:    5 RINKELTDLGRDPPSSCSAGPVGED----LFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYE 135          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  247 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 672
            +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  + ++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC931911 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  259 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 630
            R+ +E +   ++ P G VA P T+D   NL  ++  + G   + +EGG F L L+  ++YP  PP  +F    +HPNV   G +CLS L +D  W PA+ ++ +L+ IQ L+  PNP DP   D
Sbjct:    6 RIIKEIETLTRDPPPGIVAAP-TED---NLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKD--WSPALQIRTVLLSIQALMGAPNPDDPLDND 123          
The following BLAST results are available for this feature:
BLAST of FC931911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
U2D2B_MOUSE9.472e-1839.62Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC5_YEAST1.237e-1735.04Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC_ASFB71.616e-1735.94Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBCD1_DROME1.616e-1734.29Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CAEEL2.756e-1737.27Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC_ASFK53.599e-1735.07Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC1_MAGGR3.599e-1732.62Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC1_COLGL4.701e-1732.85Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D3_BOVIN4.701e-1733.10Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC13_SCHPO1.047e-1637.10Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202E05EF PostHarveN Citrus clementina cDNA clone C34202E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931911 ID=FC931911; Name=FC931911; organism=Citrus clementina; type=EST; length=707bp
GCCGGGGTTCGTCTTCGAGTCGGCGTCGTGAAATATAGAAGCATGGAAGT
TACGTAAGCTTCAATCTTCCGTTTAAGAATATCAGAAGTCAACATCCCGG
GCAGCAAGCACGTACACGGTACTCGGTACTCGGTACTCGGTACTCGGTAC
TCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGTTAGTTA
TACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTGGTATTG
CTCGCGGCCGTCTCACAGAGGAGCGAAAAGCCTGGCGCAAGAATCATCCC
CACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTGAATTTGAT
GATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTGGGAAGGTG
GCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCAGCAAACCC
CCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTCTACCCTTC
TGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTGGAGACCTG
CCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGCTGGATCAA
CCCAATCCTGCTGATCCAGCACAAACTGATGGATACCAGCTTTTCATCCA
GGATCCTGCCGAGTACAAGAGAGGGTGCGACAGCAGGCCAAAGCATATCC
ACCTGNT
back to top