FC931912

Overview
NameFC931912
Unique NameFC931912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  280 SKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 504
            +K +    G E S ++RYRGVR+RPWGR+AAEIRDP KK RVWLG+F++               RG KA TNFPL
Sbjct:   36 TKALAVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 45/106 (42.45%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  235 HYFPMRRGRSTAAAPSKPIEKRTGPEAS-------PDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNF--PLNISDSFN 525
            H    +  R+++ AP  P    T   AS         IRYRGVR+RPWGR+AAEIRDP  K R WLGTFD+             ++RG KA+TNF  P+   DS++
Sbjct:   19 HSLKRKPSRTSSTAPGSPGGVTTAKAASGAGASGVSTIRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPMPSLDSYH 124          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  262 STAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNI 510
            +T A  S      +G +  P  RYRGVR+RPWG++AAEIRDP+K  RVWLGTFD+               RG KAK NFP N+
Sbjct:  164 TTTATASSETSSFSGDQ--PRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV 244          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP-LNISDSFNAPIREENGG 552
            YRGVR+RPWG+FAAEIRDP + TRVWLGTF++               RGP+AK NFP ++ + S ++P+  ++ G
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIG 210          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 41/73 (56.16%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL---NISDSFNAPIR 537
            YRGVR+RPWG+FAAEIRDP +K TRVWLGTFD+              LRG KA  NFPL   N    FN  IR
Sbjct:  138 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEIR 210          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  265 TAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNI 510
            T +A +K  E     E     +YRGVR+RPWG++AAEIRDP K TRVWLGTF++               RG KAK NFP N+
Sbjct:   41 TGSAVTKECESSMSLERPK--KYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENV 120          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  241 FPMRRGRSTAAAPSKPIEKRTGPEASPDIR--YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISD 516
            F  R+     A P K  E     E  P  +  YRGVR+RPWG+FAAEIRDP +K TRVWLGTFD+              LRG KA  NFPL +++
Sbjct:  113 FKERKPSLNIAIPMKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEVAN 207          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  262 STAAAPSKPIEK-RTGP-----EASPDIRYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIR 537
            S AA  S P++K +T P      A+    YRGVR+RPWG+FAAEIRDP K   RVWLGTF++              +RG +A  NFPL ++     P+R
Sbjct:  119 SFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVR 217          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 47/125 (37.60%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  196 PQLPTLSFPIFLFHYFPMRRGRSTAAAPS-----------KPIEKRTGPEASPDIR-YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAP 531
            P  P L    F+  +  +    S++++P            + ++K    E   D R YRGVR+RPWG+FAAEIRDP KK +R+WLGTF+S              LRG KA  NFPL+ +  + AP
Sbjct:   53 PDSPVLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLD-AGKYEAP 176          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 39/85 (45.88%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  244 PMRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNF 498
            P+ R R  +   SK          S   RYRGVR+RPWGR+AAEIRDP  K R WLGTFD+             + RG KA+TNF
Sbjct:   31 PVSRNRKLS---SKDTTVTIAGAGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
The following BLAST results are available for this feature:
BLAST of FC931912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ERF77_ARATH2.601e-1552.00Ethylene-responsive transcription factor 10 OS=Ara... [more]
ESR2_ARATH1.686e-1442.45Ethylene-responsive transcription factor ESR2 OS=A... [more]
ABR1_ARATH4.905e-1448.19Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF109_ARATH8.366e-1448.00Ethylene-responsive transcription factor ERF109 OS... [more]
ERF5_NICSY3.179e-1356.16Ethylene-responsive transcription factor 5 OS=Nico... [more]
RAP26_ARATH4.152e-1347.56Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF5_TOBAC4.152e-1346.32Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF100_ARATH5.423e-1343.43Ethylene-responsive transcription factor 1A OS=Ara... [more]
EF106_ARATH9.250e-1337.60Ethylene-responsive transcription factor ERF106 OS... [more]
ESR1_ARATH1.208e-1245.88Ethylene-responsive transcription factor ESR1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34202E06EF PostHarveN Citrus clementina cDNA clone C34202E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931912 ID=FC931912; Name=FC931912; organism=Citrus clementina; type=EST; length=709bp
GAATGAACCCGGAATCGTGCGTTTCCGGAGCCCATCATTCATCAAAATCC
CCAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAATCAAAGCAGTCAATCA
ACAAATCTTTCACAAACCCCCCCACCATAAAAAAAAAAAAAAAATGGAAA
CGCGGTGGTAGCCTCTGTTATTAACAAAAATTTTCCCATACTTTCCCTCA
GCTTCCCACCCTTTCCTTTCCGATTTTCCTTTTCCATTATTTCCCCATGC
GGCGAGGCAGGAGCACGGCAGCAGCGCCCAGTAAGCCGATAGAGAAACGC
ACCGGACCCGAAGCATCGCCCGACATCCGATACAGAGGCGTGAGGAAGCG
TCCATGGGGCAGATTCGCCGCCGAGATCCGAGATCCCTGGAAGAAGACGC
GTGTCTGGCTCGGCACCTTCGACTCAGCCGAAGACGCCGCGCGTGCGTAC
GACGCCGCCGCGCGTTCCCTCCGTGGCCCCAAGGCCAAGACCAATTTTCC
CCTCAATATTTCGGACTCTTTTAACGCTCCGATACGGGAGGAAAATGGAG
GGTTTTGTAAGTTTGACTCGGTTGTTCAGGTCAACCGGCCCACGACGAGC
AGCATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCCCGGCCGGCCAATCA
GTTGGCGCCACCACGTCTGCAGCAGCAGCAGCAGAAGAAGATCGTCGTGC
AACCGGCGG
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