FC931912

Overview
NameFC931912
Unique NameFC931912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 42/95 (44.21%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  262 STAAAPSKPIEKRTGPEA--SPDIRYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIR 537
            S A     P  K +G  A     ++YRGVR+RPWG+FAAEIRDP K   RVWLGT+++              LRG KAK NFP  I      P+R
Sbjct:   67 SPAEENKPPATKASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVR 161          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPI 534
            YRGVR+RPWG+FAAEIRDP KK +R+WLGTF+S              LRG KA  NFPL+ +  ++AP+
Sbjct:  107 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLD-AGKYDAPV 174          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  280 SKPIEKRTGPEASPDI------RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIRE 540
            +K I  R     SPD       ++RGVR+RPWGR+AAEIRDP +  RVWLGT+D+              L+GP A TNFP++ +      + E
Sbjct:   75 TKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTE 167          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  244 PMRRGRSTAAAPSKPI---EKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            P + G  ++    KP+   E+R G     ++ YRG+R+RPWG++AAEIRDP K  RVWLGTF +              +RG KAK NFP
Sbjct:   19 PSQLGSVSSRKKRKPVSVSEERDGKRERKNL-YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  328 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNI 510
            RYRGVR+RPWG++AAEIRDP +  RVWLGTFD+               RG KAK NFP ++
Sbjct:   76 RYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDV 136          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  328 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            ++RGVR+RPWG++AAEIRDP ++ RVWLGTFD+              LRGP A+ NFP
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  328 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            RY+G+R+RPWGR+AAEIRDP K  RVWLGTF++              +RG KAK NFP
Sbjct:   24 RYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFP 81          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNI 510
            YRGVR+RPWG++AAEIRDP K  RVWLGTFD+               RG KAK NFP +I
Sbjct:   70 YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHI 129          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 40/88 (45.45%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  262 STAAAPSKPIEKRTGPEASPDIR------YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 504
            ST +    P+     P  +P ++      YRGVR+RPWG++AAEIRDP KK  RVWLGTFD+              LRG KA  NFPL
Sbjct:   43 STLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPL 130          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  328 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNF 498
            +YRGVR+RPWG+FAAEIRDP  +TR+WLGTF +              L+GPKA TNF
Sbjct:  104 KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
The following BLAST results are available for this feature:
BLAST of FC931912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ERF99_ARATH1.208e-1244.21Ethylene-responsive transcription factor 13 OS=Ara... [more]
EF107_ARATH1.208e-1253.62Ethylene-responsive transcription factor ERF107 OS... [more]
PTI6_SOLLC1.578e-1240.86Pathogenesis-related genes transcriptional activat... [more]
ERF71_ARATH3.515e-1242.70Ethylene-responsive transcription factor ERF071 OS... [more]
EF110_ARATH3.515e-1254.10Ethylene-responsive transcription factor ERF110 OS... [more]
CRF1_ARATH4.591e-1253.45Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF73_ARATH5.996e-1255.17Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH5.996e-1256.67Ethylene-responsive transcription factor ERF112 OS... [more]
EF105_ARATH5.996e-1245.45Ethylene-responsive transcription factor ERF105 OS... [more]
CRF6_ARATH5.996e-1256.14Ethylene-responsive transcription factor CRF6 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34202E06EF PostHarveN Citrus clementina cDNA clone C34202E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931912 ID=FC931912; Name=FC931912; organism=Citrus clementina; type=EST; length=709bp
GAATGAACCCGGAATCGTGCGTTTCCGGAGCCCATCATTCATCAAAATCC
CCAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAATCAAAGCAGTCAATCA
ACAAATCTTTCACAAACCCCCCCACCATAAAAAAAAAAAAAAAATGGAAA
CGCGGTGGTAGCCTCTGTTATTAACAAAAATTTTCCCATACTTTCCCTCA
GCTTCCCACCCTTTCCTTTCCGATTTTCCTTTTCCATTATTTCCCCATGC
GGCGAGGCAGGAGCACGGCAGCAGCGCCCAGTAAGCCGATAGAGAAACGC
ACCGGACCCGAAGCATCGCCCGACATCCGATACAGAGGCGTGAGGAAGCG
TCCATGGGGCAGATTCGCCGCCGAGATCCGAGATCCCTGGAAGAAGACGC
GTGTCTGGCTCGGCACCTTCGACTCAGCCGAAGACGCCGCGCGTGCGTAC
GACGCCGCCGCGCGTTCCCTCCGTGGCCCCAAGGCCAAGACCAATTTTCC
CCTCAATATTTCGGACTCTTTTAACGCTCCGATACGGGAGGAAAATGGAG
GGTTTTGTAAGTTTGACTCGGTTGTTCAGGTCAACCGGCCCACGACGAGC
AGCATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCCCGGCCGGCCAATCA
GTTGGCGCCACCACGTCTGCAGCAGCAGCAGCAGAAGAAGATCGTCGTGC
AACCGGCGG
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