FC931912

Overview
NameFC931912
Unique NameFC931912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            YRG+RKRPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIREENGGFCK 561
            YRGVR RPWG+FAAEIRDP ++ TRVWLGTF++              LRG KA  NFPL + D +N    +  G + K
Sbjct:  137 YRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEV-DKWNPRAEDGRGLYNK 213          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  295 KRTGPEASPDI------RYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNI 510
            + T PE +  +       YRGVR+RPWG+FAAEIRDP K+ +RVWLGTFD+              LRG KA  NFPL +
Sbjct:  138 ENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEV 216          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIR 537
            YRGVR+RPWG+FAAEIRDP K   RVWLGTF++              +RG +A  NFPL ++     P+R
Sbjct:  117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVR 186          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  328 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            +YRG+R+RPWG++AAEIRDP K +R WLGTFD+              +RG KAK NFP
Sbjct:  127 QYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP 184          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 42/96 (43.75%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  262 STAAAPS--KPIEKRTGPEASPDIR-YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIR 537
            +T+  PS   P E  T     P  R YRGVR+RPWG+FAAEIRDP K   RVWLGT+++              +RG KA  NFP  I  +   P+R
Sbjct:   77 ATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVR 172          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 33/72 (45.83%), Postives = 41/72 (56.94%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIREEN 546
            YRGVR+RPWG++AAEIRDP K  RVWLGTF++               +G KAK NFP  +    N+     N
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSN 161          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  280 SKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNI 510
            S+ +  +T  E   +  YRGVR+RPWG++AAEIRDP KK  R+WLGT+D+              LRG KA  NFPL++
Sbjct:   72 SRTVSTKTEKEEE-ERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDV 148          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  298 RTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISD 516
            R   +A P  R+ GVR+RPWGR+AAEIRDP  K R WLGTFD+             S+RG +A+TNF    +D
Sbjct:   26 RRSKQAEPG-RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYTPTD 97          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  328 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            ++RG+R+RPWG++AAEIRDP K  RVWLGTF+S              +RG KAK NFP
Sbjct:  119 QFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
The following BLAST results are available for this feature:
BLAST of FC931912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RAP23_ARATH7.830e-1256.14Ethylene-responsive transcription factor RAP2-3 OS... [more]
EF103_ARATH7.830e-1248.72Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF102_ARATH7.830e-1248.10Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF101_ARATH1.336e-1148.57Ethylene-responsive transcription factor 2 OS=Arab... [more]
RAP22_ARATH1.744e-1153.45Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF2_NICSY1.744e-1143.75Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF114_ARATH1.744e-1145.83Ethylene-responsive transcription factor ERF114 OS... [more]
EF104_ARATH1.744e-1146.15Ethylene-responsive transcription factor ERF104 OS... [more]
ERF86_ARATH2.278e-1147.95Ethylene-responsive transcription factor ERF086 OS... [more]
ERF1_ORYSJ2.278e-1153.45Ethylene-responsive transcription factor 1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC34202E06EF PostHarveN Citrus clementina cDNA clone C34202E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931912 ID=FC931912; Name=FC931912; organism=Citrus clementina; type=EST; length=709bp
GAATGAACCCGGAATCGTGCGTTTCCGGAGCCCATCATTCATCAAAATCC
CCAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAATCAAAGCAGTCAATCA
ACAAATCTTTCACAAACCCCCCCACCATAAAAAAAAAAAAAAAATGGAAA
CGCGGTGGTAGCCTCTGTTATTAACAAAAATTTTCCCATACTTTCCCTCA
GCTTCCCACCCTTTCCTTTCCGATTTTCCTTTTCCATTATTTCCCCATGC
GGCGAGGCAGGAGCACGGCAGCAGCGCCCAGTAAGCCGATAGAGAAACGC
ACCGGACCCGAAGCATCGCCCGACATCCGATACAGAGGCGTGAGGAAGCG
TCCATGGGGCAGATTCGCCGCCGAGATCCGAGATCCCTGGAAGAAGACGC
GTGTCTGGCTCGGCACCTTCGACTCAGCCGAAGACGCCGCGCGTGCGTAC
GACGCCGCCGCGCGTTCCCTCCGTGGCCCCAAGGCCAAGACCAATTTTCC
CCTCAATATTTCGGACTCTTTTAACGCTCCGATACGGGAGGAAAATGGAG
GGTTTTGTAAGTTTGACTCGGTTGTTCAGGTCAACCGGCCCACGACGAGC
AGCATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCCCGGCCGGCCAATCA
GTTGGCGCCACCACGTCTGCAGCAGCAGCAGCAGAAGAAGATCGTCGTGC
AACCGGCGG
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