FC931912

Overview
NameFC931912
Unique NameFC931912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  292 EKRTGPEASP-----DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNF 498
            +K+  P+  P     +I+Y GVR+RPWGR+AAEIR+P  K R WLGTFD+             S+RG  A+TNF
Sbjct:   21 QKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 42/96 (43.75%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  262 STAAAPS--KPIEKRTGPEASPDIR-YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIR 537
            +T   PS   P E  T     P  R YRGVR+RPWG+FAAEIRDP K   RVWLGT+++              +RG KA  NFP  I  +   P+R
Sbjct:   73 ATIPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVR 168          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            YRGVR+RPWG++AAEIRDP K  RVWLGTF++               +G KAK NFP
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            YRGVR+RPWG++AAEIRDP K  RVWLGTF++               +G KAK NFP
Sbjct:   39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1
Query:  328 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNF 498
            R+ GVR+RPWGR+AAEIRDP  K R WLGTFD+             S+RG +A+TNF
Sbjct:   19 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 40/87 (45.98%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  286 PIEKRTGPEAS-PDIR-YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIR 537
            P E    P A  P  R YRGVR+RPWG+FAAEIRDP K   RVWLGT+++              +RG KA  NFP  I  +   P+R
Sbjct:   88 PAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVR 174          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query:  331 YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFNAPIR 537
            YRGVR+RPWG+FAAEIRDP K   RVWLGT++S              +RG KA  NFP  I  +   P+R
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVR 176          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  250 RRGRSTAAAPSKPIEKRTGPEASPDI-----RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 504
            +R  S++     P   R  P     +     ++RGVR+RPWG++AAEIRDP ++ R+WLGTF++              LRGP A TNF +
Sbjct:   93 KRLSSSSDETQSPASSRQRPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182          
The following BLAST results are available for this feature:
BLAST of FC931912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ERF87_ARATH2.976e-1145.95Ethylene-responsive transcription factor ERF087 OS... [more]
ERF2_TOBAC2.976e-1143.75Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF115_ARATH2.976e-1154.39Ethylene-responsive transcription factor ERF115 OS... [more]
EF113_ARATH3.886e-1154.39Ethylene-responsive transcription factor ERF113 OS... [more]
LEP_ARATH5.076e-1154.39Ethylene-responsive transcription factor LEP OS=Ar... [more]
ERF1_TOBAC6.629e-1145.98Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF1_SOLLC6.629e-1150.00Ethylene-responsive transcription factor 1 OS=Sola... [more]
CRF3_ARATH6.629e-1137.78Ethylene-responsive transcription factor CRF3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34202E06EF PostHarveN Citrus clementina cDNA clone C34202E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931912 ID=FC931912; Name=FC931912; organism=Citrus clementina; type=EST; length=709bp
GAATGAACCCGGAATCGTGCGTTTCCGGAGCCCATCATTCATCAAAATCC
CCAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAATCAAAGCAGTCAATCA
ACAAATCTTTCACAAACCCCCCCACCATAAAAAAAAAAAAAAAATGGAAA
CGCGGTGGTAGCCTCTGTTATTAACAAAAATTTTCCCATACTTTCCCTCA
GCTTCCCACCCTTTCCTTTCCGATTTTCCTTTTCCATTATTTCCCCATGC
GGCGAGGCAGGAGCACGGCAGCAGCGCCCAGTAAGCCGATAGAGAAACGC
ACCGGACCCGAAGCATCGCCCGACATCCGATACAGAGGCGTGAGGAAGCG
TCCATGGGGCAGATTCGCCGCCGAGATCCGAGATCCCTGGAAGAAGACGC
GTGTCTGGCTCGGCACCTTCGACTCAGCCGAAGACGCCGCGCGTGCGTAC
GACGCCGCCGCGCGTTCCCTCCGTGGCCCCAAGGCCAAGACCAATTTTCC
CCTCAATATTTCGGACTCTTTTAACGCTCCGATACGGGAGGAAAATGGAG
GGTTTTGTAAGTTTGACTCGGTTGTTCAGGTCAACCGGCCCACGACGAGC
AGCATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCCCGGCCGGCCAATCA
GTTGGCGCCACCACGTCTGCAGCAGCAGCAGCAGAAGAAGATCGTCGTGC
AACCGGCGG
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