FC931918

Overview
NameFC931918
Unique NameFC931918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAP_CANAL (Poly(A) polymerase PAPalpha OS=Candida albicans GN=PAPALPHA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYL-RIDISAENADDLRNWKGWVESRLRQLTLKV 323
            +PR  P D+ H MP+ITPAYP M +++N+++ST ++++ E  RG  I +  E +     W  LFE  +FF  YK YL  +  S ++A++ + W G++ES+LRQL LK+
Sbjct:  287 NPRLYPHDRLHRMPVITPAYPSMCATHNITSSTQKVILAELSRGSSIMQ--EIHAGKKTWSDLFEKHSFFYKYKFYLCVVAASIDSAEEHKKWSGFIESKLRQLVLKL 392          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAP_SCHPO (Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe GN=pla1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKV 323
            +P+  P DK H MPIITPAYP M +++N++ ST  I++ E  R  EI + +      + W  LF+   FF  YK+YL I  +A+ A+    W G VES+LR L  ++
Sbjct:  287 NPKLYPSDKAHRMPIITPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKA--LPWSALFQKHDFFHRYKHYLTITAAAKTAEAQLKWAGLVESKLRHLVTRL 391          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPO3_XENLA (Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 224
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I + +   +A  +W  LF+   FF+ YK
Sbjct:  298 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKA--EWSKLFDAPNFFQKYK 369          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAP_YEAST (Poly(A) polymerase OS=Saccharomyces cerevisiae GN=PAP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLR-NWKGWVESRLRQLTLKV 323
            +P+   +D+ H MP+ITPAYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  YK YL I      +D+    W G VES++R L +K+
Sbjct:  288 NPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKL 393          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPA_CANAL (Poly(A) polymerase PAPa OS=Candida albicans GN=PAPA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAEN--ADDLRNWKGWVESRLRQLTLKV 323
            +PR    D+ H MP+ITPAYP M +++N+++ST ++++ EFQRG E+    + N     W  L E   FF  YK YL I  +  +  A+ L+ + G VES+LR L  K+
Sbjct:  287 NPRLYALDRQHRMPVITPAYPSMCATHNITSSTQKVILSEFQRGIELMN--DINVGKKSWSDLLERHDFFFRYKFYLCIVAATRSTYAEHLK-YSGMVESKLRLLVQKL 392          
The following BLAST results are available for this feature:
BLAST of FC931918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PAP_CANAL1.207e-1740.74Poly(A) polymerase PAPalpha OS=Candida albicans GN... [more]
PAP_SCHPO5.070e-1640.19Poly(A) polymerase pla1 OS=Schizosaccharomyces pom... [more]
PAPO3_XENLA5.605e-1552.70Poly(A) polymerase type 3 (Fragment) OS=Xenopus la... [more]
PAP_YEAST2.130e-1437.96Poly(A) polymerase OS=Saccharomyces cerevisiae GN=... [more]
PAPA_CANAL6.852e-1339.45Poly(A) polymerase PAPa OS=Candida albicans GN=PAP... [more]

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Properties
Property NameValue
Genbank descriptionC34202F01EF PostHarveN Citrus clementina cDNA clone C34202F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931918 ID=FC931918; Name=FC931918; organism=Citrus clementina; type=EST; length=698bp
GGGATCCGAGAAGAAATCCGAAGGACAAGTATCATTTGATGCCTATAATA
ACTCCAGCTTATCCTTGCATGAATTCCAGCTATAATGTGTCAACAAGTAC
CTTGCGGATTATGATGGATGAATTTCAGCGAGGACATGAAATTTGTGAGG
CTATGGAAAAAAATGAAGCTGATGTTGATTGGGATACACTTTTTGAGCCT
TTCACCTTTTTTGAAGCATATAAAAATTATCTACGGATAGATATCTCTGC
AGAAAATGCTGATGATTTAAGAAATTGGAAAGGTTGGGTTGAGTCTCGGC
TCCGTCAGCTTACATTGAAGGTTAATGCCACAACTCTTCATGCATGGCTG
TTTGCATTTTTCACTTCTATAAAGCGGAAACAAGGAGTTCCTGTTGGTGA
AGGTGAACAGTTTGATATTAGGTTAACTGTGAAGGAGTTTAAGCAAGCTG
TCAGCATGTACACGTTACGGAAGCCTGGAATGCAGATTAGTGTTGCTCAT
GTTACACGTAGGAACTTACCTAACTTTGTATTTCCGGGTGGGGTTCGACC
TTCTCGTCCTTCAAAAGGAACTTGGGATAGTAGGCGGGCTTTGGAACGTA
AGGTGTCAAGCCATACTAAACCAGGAGCAGATGATGGAAGGAAGAGAAAA
CAGACGGATGATAATGTAGATACTCACTTGAGAAATGCCAAGTGCCAT
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