FC931927

Overview
NameFC931927
Unique NameFC931927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC931927 vs. ExPASy Swiss-Prot
Match: MGDG3_ORYSJ (Probable monogalactosyldiacylglycerol synthase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=MGD3 PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.894e-58
Identity = 109/192 (56.77%), Postives = 141/192 (73.44%), Query Frame = 1 
Query:  112 EDEG-LPLNGIENDQPKKVLILMSDTGGGHRASAEAIKAAFHEKFGNEYQVFVTDLWSDHTPWPFNQLPRSYNFLVKHGPLWKMTYYGTAPRVIHQSNFAATSTFIAREVAKGLMKYQPDIIISVHPLMQHVPLRILRAKGLLKKIVFTTVITDLSTCHPTWFHKLVTRCYCPTADVAKRAMKAGLXASQIK 684
            E+EG + L  +  ++ K VLILMSDTGGGHRASA+AIK  F  +FG++Y+VFV DL  DH  WP N +  SY F+VKH  LWK+ ++ T+PR +H    AA ++F A++V  GL KY+PDIIISVHPLMQH+PL +L+ +GL  ++VF TVITDL+TCHPTWFH  V RCYCP+ +VAKRA    L  SQI+
Sbjct:   84 EEEGTVELVQLGANRAKNVLILMSDTGGGHRASAQAIKDPFRIEFGDDYRVFVKDLCKDHAGWPLNNMESSYKFMVKHVQLWKVAFHTTSPRWVHCFYLAALASFYAKKVEAGLKKYKPDIIISVHPLMQHIPLWVLKWQGLQNRVVFVTVITDLNTCHPTWFHADVNRCYCPSEEVAKRAALDDLQPSQIR 275
The following BLAST results are available for this feature:
BLAST of FC931927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MGDG3_ORYSJ1.894e-5856.77Probable monogalactosyldiacylglycerol synthase 3, ... [more]

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Properties
Property NameValue
Genbank descriptionC34202F10EF PostHarveN Citrus clementina cDNA clone C34202F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931927 ID=FC931927; Name=FC931927; organism=Citrus clementina; type=EST; length=711bp
GTTTATAAGGCTATTAAGTTCCACTGTGAGAGATTACCAATTGGGTTCGC
TTCTGTTGGGATTAATTCGAGTGAGAGAAATGGGATAAGGGATGAAAACG
GTGGCGTTTTGGAGGATGAGGGGTTGCCTTTGAATGGTATTGAGAATGAT
CAGCCGAAAAAAGTTTTGATTTTGATGAGTGATACCGGTGGCGGTCACCG
TGCTTCTGCTGAAGCTATTAAGGCCGCGTTTCATGAGAAATTTGGCAATG
AGTATCAGGTGTTTGTTACTGATTTATGGTCGGATCATACGCCTTGGCCG
TTTAACCAATTGCCCCGAAGCTACAACTTCTTGGTAAAGCACGGGCCATT
GTGGAAAATGACATATTATGGAACTGCTCCCCGTGTGATTCACCAATCTA
ATTTTGCCGCTACTTCAACATTCATTGCCCGGGAGGTTGCCAAAGGATTG
ATGAAATACCAGCCGGACATTATTATTAGTGTACATCCACTGATGCAACA
TGTTCCACTTCGTATCCTGAGGGCAAAAGGCCTTCTAAAGAAGATAGTTT
TTACCACAGTAATTACAGATTTAAGCACTTGCCACCCTACATGGTTTCAT
AAACTTGTAACAAGATGCTACTGCCCCACAGCAGATGTAGCAAAGAGGGC
AATGAAAGCTGGTTTGCANGCTTCCCAGATTAAGTTTACGGCCTTCCTGT
TCGACCTTCTT
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