FC931929

Overview
NameFC931929
Unique NameFC931929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15159 contig Ccv1_Contig15159:230..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.627e-42
Identity = 99/223 (44.39%), Postives = 138/223 (61.88%), Query Frame = 2
Query:   23 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLS--QNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPAL 676
            FS SE++ AT NF+ S  IG GG+G++Y G L    +VA+K  +P S QG +EFQ EI +LSK+RH +LV+L+G C E     LVYE++ NG   D L  K N  PL+W+ R+ I       L +LH+     I+H D+K  NILLD   V+K++DFG+S+ ++  QN +S         T  KG+F Y+DPE+    +LT KS VYSFG++LL  L  RPA+
Sbjct:  514 FSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGK-NLAPLTWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDVAFGQNHVS---------TAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARPAI 726          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 93/218 (42.66%), Postives = 132/218 (60.55%), Query Frame = 2
Query:   23 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQV-AIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGR 667
            F+F E+   T+NF  +  +G GGYG +YKG L + QV AIK     S+QG  EF+ EI++LS++ H N+V L+G C   +   LVYEY+PNGSL D LS K N   L W  R++IA      L +LH      I+H D+K  NILLD +  +K++DFG+S+ +   E +   T +      KGT  Y+DPE+  + +LT KS VY FG+++L  LTG+
Sbjct:  622 FTFEELSKCTNNFSDANDVGGGGYGQVYKGTLPNGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSLRDGLSGK-NGVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQV------KGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGK 832          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 102/221 (46.15%), Postives = 137/221 (61.99%), Query Frame = 2
Query:   26 SFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHM-QVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV--WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHS-CKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPAL 676
            ++SEI   T+NF+    IGEGG+G +Y G L    QVA+K+L P S QG  EF+ E+++L ++ H NLV+LVG C E     L+YEY+ NG L+  LS K     L W+ R+ IA E    L +LHS CKP  +VH D+K  NILLD +F +KL+DFG+SR  S  E S  +T +       GT  Y+DPE+  +  LT KS VYSFGI+LL  +T +P L
Sbjct:  564 TYSEILLMTNNFERV--IGEGGFGVVYHGYLNDSEQVAVKVLSPSSSQGYKEFKAEVELLLRVHHINLVSLVGYCDEQAHLALIYEYMANGDLKSHLSGKHGDCVLKWENRLSIAVETALGLEYLHSGCKP-LMVHRDVKSMNILLDEHFQAKLADFGLSRSFSVGEESHVSTGVV------GTPGYLDPEYYRTYRLTEKSDVYSFGIVLLEIITNQPVL 775          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 93/227 (40.97%), Postives = 142/227 (62.56%), Query Frame = 2
Query:   23 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV---WTLVYEYLPNGSLEDRLSCKDNSP-PLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGITR 688
            FS+ E+E AT+NFDPS ++G+GG+G++Y G L+    VA+K L+ ++ +   +F+ E++IL+ +RHPNLV L G   +      LVYEY+ NG+L D L     +P  L W  R++IA E  S L +LH+ K   I+H D+K  NILLD NF  K++DFG+SR    ++   +       T P+GT  Y+DP++    +L+ KS VYSF ++L+  ++  PA+ ITR
Sbjct:  332 FSYEELEEATNNFDPSKELGDGGFGTVYYGKLKDGRSVAVKRLYDNNFKRAEQFRNEVEILTGLRHPNLVALFGCSSKQSRDLLLVYEYVANGTLADHLHGPQANPSSLPWSIRLKIAVETASALKYLHASK---IIHRDVKSNNILLDQNFNVKVADFGLSRLFPMDKTHVS-------TAPQGTPGYVDPDYHLCYQLSNKSDVYSFAVVLMELISSLPAVDITR 548          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: IRAK4_BOVIN (Interleukin-1 receptor-associated kinase 4 OS=Bos taurus GN=IRAK4 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.637e-41
Identity = 100/233 (42.92%), Postives = 139/233 (59.66%), Query Frame = 2
Query:   14 FSDFSFSEIEGATHNFDP------SLKIGEGGYGSIYKGLLRHMQVAIK----MLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV--WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPAL 676
            F  FSF E++  T+NFD         K+GEGG+G +YKG + +  VA+K    M+   + +   +F QEI +++K +H NLV L+G   +     LVY Y+PNGSL DRLSC D +PPLSW  R +IA    + L +LH    +  +H D+K ANILLD +F +K+SDFG++R       S         +   GT AYM PE L  GE+TPKS +YSFG++LL  +TG PA+
Sbjct:  166 FHSFSFFELKDVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNRTVAVKKLAAMVDISTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWNMRCKIAQGAANGLSYLHE---NHHIHRDIKSANILLDEDFTAKISDFGLAR------ASEKFAQTVMTSRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEIITGLPAV 388          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 91/230 (39.57%), Postives = 143/230 (62.17%), Query Frame = 2
Query:   23 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV--WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHS-CKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGITRKCSMH 703
            F +SE+   T+NF+    IG+GG+G +Y G++   QVA+K+L   S QG  EF+ E+D+L ++ H NL +LVG C E+    L+YEY+ N +L D L+ K  S  LSW+ R++I+ +    L +LH+ CKP  IVH D+KP NILL+    +K++DFG+SR  S       +T +       G+  Y+DPE+ ++ ++  KS VYS G++LL  +TG+PA+  ++   +H
Sbjct:  564 FKYSEVVNITNNFERV--IGKGGFGKVYHGVINGEQVAVKVLSEESAQGYKEFRAEVDLLMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGK-RSFILSWEERLKISLDAAQGLEYLHNGCKP-PIVHRDVKPTNILLNEKLQAKMADFGLSRSFSVEGSGQISTVVA------GSIGYLDPEYYSTRQMNEKSDVYSLGVVLLEVITGQPAIASSKTEKVH 783          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: IRAK4_HUMAN (Interleukin-1 receptor-associated kinase 4 OS=Homo sapiens GN=IRAK4 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.647e-41
Identity = 100/233 (42.92%), Postives = 138/233 (59.23%), Query Frame = 2
Query:   14 FSDFSFSEIEGATHNFDP------SLKIGEGGYGSIYKGLLRHMQVAIK----MLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV--WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPAL 676
            F  FSF E++  T+NFD         K+GEGG+G +YKG + +  VA+K    M+   + +   +F QEI +++K +H NLV L+G   +     LVY Y+PNGSL DRLSC D +PPLSW  R +IA    + + FLH    +  +H D+K ANILLD  F +K+SDFG++R       S         +   GT AYM PE L  GE+TPKS +YSFG++LL  +TG PA+
Sbjct:  165 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGLAR------ASEKFAQTVMTSRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEIITGLPAV 387          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: IRAK4_MOUSE (Interleukin-1 receptor-associated kinase 4 OS=Mus musculus GN=Irak4 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.221e-41
Identity = 100/241 (41.49%), Postives = 144/241 (59.75%), Query Frame = 2
Query:   14 FSDFSFSEIEGATHNFDPSL------KIGEGGYGSIYKGLLRHMQVAIK----MLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV--WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRF---LSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGITRK 691
            F  FSF E++  T+NFD         ++GEGG+G +YKG + +  VA+K    M+   + +   +F QEI +++  +H NLV L+G   +     LVY Y+PNGSL DRLSC D +PPLSW TR ++A    + + FLH    +  +H D+K ANILLD +F +K+SDFG++R    L+Q  ++S            GT AYM PE L  GE+TPKS +YSFG++LL  +TG  A+   R+
Sbjct:  165 FHSFSFHELKSITNNFDEQPASAGGNRMGEGGFGVVYKGCVNNTIVAVKKLGAMVEISTEELKQQFDQEIKVMATCQHENLVELLGFSSDSDNLCLVYAYMPNGSLLDRLSCLDGTPPLSWHTRCKVAQGTANGIRFLHE---NHHIHRDIKSANILLDKDFTAKISDFGLARASARLAQTVMTSRIV---------GTTAYMAPEAL-RGEITPKSDIYSFGVVLLELITGLAAVDENRE 392          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.125e-41
Identity = 93/225 (41.33%), Postives = 137/225 (60.89%), Query Frame = 2
Query:   29 FSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRF---LSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGIT 685
            F+ ++ AT+NFD S  IG GG+G +YKG L    +VA+K  +P S QG +EF+ EI++LS+ RH +LV+L+G C E     L+YEY+ NG+++  L      P L+W+ R+ I       L +LH+     ++H D+K ANILLD NF++K++DFG+S+    L Q  +S         T  KG+F Y+DPE+    +LT KS VYSFG++L   L  RP +  T
Sbjct:  475 FAAVKDATNNFDESRNIGVGGFGKVYKGELNDGTKVAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLY-GSGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVS---------TAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPT 689          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 97/219 (44.29%), Postives = 135/219 (61.64%), Query Frame = 2
Query:   23 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWT--LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRF--LSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTG 664
            ++F+E++ AT +F    +IG GGYG +YKG L   + VA+K     SLQG  EF  EI++LS++ H NLV+L+G C +     LVYEY+PNGSL+D LS +   P LS   R+RIA      +++LH+     I+H D+KP+NILLD+    K++DFGIS+   L    +  ++ T    T  KGT  Y+DPE+  S  LT KS VYS GI+ L  LTG
Sbjct:  619 YNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFRQP-LSLALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILLDSKMNPKVADFGISKLIALDGGGVQRDHVT----TIVKGTPGYVDPEYYLSHRLTEKSDVYSLGIVFLEILTG 832          
The following BLAST results are available for this feature:
BLAST of FC931929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y4391_ARATH5.627e-4244.39Probable receptor-like protein kinase At4g39110 OS... [more]
Y5977_ARATH9.598e-4242.66Probable leucine-rich repeat receptor-like protein... [more]
Y5169_ARATH9.598e-4246.15Probable LRR receptor-like serine/threonine-protei... [more]
Y1839_ARATH9.598e-4240.97Probable serine/threonine-protein kinase At1g18390... [more]
IRAK4_BOVIN1.637e-4142.92Interleukin-1 receptor-associated kinase 4 OS=Bos ... [more]
SIRK_ARATH3.647e-4139.57Senescence-induced receptor-like serine/threonine-... [more]
IRAK4_HUMAN3.647e-4142.92Interleukin-1 receptor-associated kinase 4 OS=Homo... [more]
IRAK4_MOUSE6.221e-4141.49Interleukin-1 receptor-associated kinase 4 OS=Mus ... [more]
HERK_ARATH8.125e-4141.33Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y5374_ARATH1.061e-4044.29Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202F12EF PostHarveN Citrus clementina cDNA clone C34202F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931929 ID=FC931929; Name=FC931929; organism=Citrus clementina; type=EST; length=719bp
CATGCCTCAGTTTTTCTCTGATTTCTCTTTTTCAGAGATTGAGGGAGCAA
CTCATAACTTTGATCCTTCCCTGAAGATTGGGGAAGGAGGATATGGGAGC
ATTTACAAAGGTCTCCTGCGACATATGCAAGTGGCTATTAAGATGTTGCA
CCCTCATAGCTTGCAAGGACCCTCTGAATTTCAACAGGAGATTGATATTC
TGAGTAAGATAAGACATCCAAATCTTGTAACTCTTGTTGGAGCCTGTCCA
GAAGTGTGGACTCTGGTCTACGAGTATCTGCCCAATGGCAGCCTTGAAGA
CCGACTCAGCTGCAAGGATAACTCTCCCCCTTTATCCTGGCAAACTCGAA
TCCGCATTGCCACTGAGCTATGCTCTGTCCTTATCTTTCTCCATTCTTGT
AAACCTCACAGCATTGTGCATGGTGATTTGAAACCTGCCAATATTCTTCT
TGATGCTAACTTTGTTAGCAAACTTAGTGACTTTGGTATCTCTCGCTTTC
TATCTCAAAATGAAATTTCAAGTAACAACACAACACTGTGTTGTAGGACT
GACCCTAAGGGTACATTTGCGTATATGGATCCAGAGTTTCTGGCATCAGG
GGAACTTACTCCGAAGTCAGGTGTTTACTCATTTGGGATTATTTTATTGC
GCTTTTTGACTGGGAGACCAGCTTTGGGGATAACAAGGAAGTGCAGTATG
CATTAGATACAGGAAACTG
back to top