FC931932

Overview
NameFC931932
Unique NameFC931932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 63/196 (32.14%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            I P+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA +  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++  P    E+ +V   +    ++APVSG    + DG L I AAGD  V +  +  F  +GK + F+GE G      +   +V G+ +  ++EG+  A
Sbjct:  244 IIPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLA 439          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 63/196 (32.14%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ P   YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLA 458          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A
Sbjct:  262 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLA 451          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24
Identity = 59/192 (30.73%), Postives = 102/192 (53.12%), Query Frame = 1
Query:  109 TPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            T S   +G+IG+G MG   A  L+  G+++ V+  +     +L+ +GA +A SP +VAK + V+ +M+     V+++    +GI   + PG + +D+++  PA ARE+  +A++     +D PVSGG  GA  G L     G            E +GK     G+ G GQ  K+ N +V+G +++ +SE +
Sbjct:   19 TSSSKTVGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAM 210          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 63/197 (31.98%), Postives = 103/197 (52.28%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD 693
            I  S  + G++G+G+MG  M   LL++G+SV V+ RT++K  + Q  GA +A +P DV + + V FS V  PQ  + +     G++S    G  YV+ T   P  + +I +    K    ++A + G    A +G L I AAG+  + +     FE + + +F MG+ G      +  Q++ G  L G++EGL  AD
Sbjct:  269 IQASNLKFGFLGLGIMGCGMVKNLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYMGDVGNATKMNLVLQMISGVMLAGIAEGLALAD 465          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 65/188 (34.57%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  121 TRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            T I ++G+G MG  MA+ LL AG+ V V+       L L  QGA  A S     + + VV SM+   Q V S+ L  DG+++ +    + +D ++  P  AR++ + A  K    +DAPVSGG  GAR G L+    G +       P+ E +G+  F  G+ G GQ  KI N +++G  + G +E L
Sbjct:    2 TDIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEAL 189          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 62/227 (27.31%), Postives = 110/227 (48.46%), Query Frame = 1
Query:   16 HKLTSFFTPQSPSSLSLINSANMETPYPKPITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD 693
            H L    T   P +  +  S+       + I  S+ + G++G+GVMG  +   L+ +G+SV V+ R++ K  + Q  GA +A +P DV + + V +S V  PQ  + +     G++S    G  YV+ T   P  + +I +    K    ++A + G    A +G L I A+GD  + +     FE + + +F +G+ G      +  Q++ G  L G++E +  AD
Sbjct:  246 HLLNRPVTVTRPETPEIDMSSVSNAVQSRNIKASQLKFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYLGDVGNATKMNLILQMISGITLAGVAEAMALAD 472          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 55/190 (28.95%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  115 SKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG-KPTFMGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            SKT +G+IG+G MGN MA  L+  GY + +Y        + +  G  +A+SP +VA+ +  + +M+ +  +   +    +GI+  +  G++ +D+++  P++++E+ K   +     +DAPVSGG   AR G L     G          L E +G    + G  G GQS KI N +++  +++G +E +
Sbjct:   37 SKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAM 226          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 56/190 (29.47%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  115 SKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG-KPTFMGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            SKT +G+IG+G MGN MA  L+  GY + +Y        + Q  G  + +SP DVA+ +  + +M+ T  +        +GI+  +  G++ +D+++  PA+++E+ K   +     +DAPVSGG   AR G L     G          L   +G    + G  G GQ+ KI N +++  +++G +E +
Sbjct:   38 SKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAM 227          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20
Identity = 56/190 (29.47%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  115 SKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG-KPTFMGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            SKT +G+IG+G MGN MA  L+  GY + +Y        + Q  G  + +SP DVA+ +  + +M+ T  +        +GI+  +  G++ +D+++  PA+++E+ K   +     +DAPVSGG   AR G L     G          L   +G    + G  G GQ+ KI N +++  +++G +E +
Sbjct:   38 SKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAM 227          
The following BLAST results are available for this feature:
BLAST of FC931932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GLYR1_XENTR1.410e-2632.14Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_PONAB4.103e-2632.14Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_MOUSE4.103e-2632.65Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
3HIDH_DICDI2.251e-2430.73Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
GLYR1_AEDAE1.459e-2331.98Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
MMSB_PSEAE6.131e-2234.573-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]
GLYR1_ANOGA2.330e-2127.31Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]
3HIDH_MOUSE5.190e-2128.953-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_PONAB1.156e-2029.473-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_HUMAN1.156e-2029.473-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC34202G03EF PostHarveN Citrus clementina cDNA clone C34202G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931932 ID=FC931932; Name=FC931932; organism=Citrus clementina; type=EST; length=694bp
GATGGTGCACGGCCTCACAAGCTCACTTCATTTTTCACTCCCCAAAGTCC
ATCTTCTCTCTCACTCATCAACTCTGCAAATATGGAAACTCCTTATCCAA
AGCCCATTACTCCCAGCAAGACCCGCATCGGCTGGATCGGGATCGGCGTA
ATGGGCAACGCCATGGCTTCCCGCCTTCTCTCCGCCGGCTACTCCGTCAC
CGTCTACGCTCGCACCTCATCAAAAGCCCTTCAGCTCCAATCACAAGGCG
CCACTCTCGCCGCTTCACCGTTCGACGTCGCCAAATCAAGCGGCGTTGTC
TTCTCCATGGTGGGCACCCCACAAGACGTTCGATCAATTGCCCTCGATCC
CGACGGCATCGTTTCTGGCCTCAACCCCGGCGCCGTCTACGTTGACACCA
CGAGCAGTCACCCTGCCCTCGCGCGGGAAATATTCAAAGTCGCAAGAGAG
AAAGATTGCTGGGCTGTTGACGCACCCGTATCCGGAGGCGACATTGGCGC
CCGAGATGGGAAATTAGCTATATTTGCTGCTGGTGATAGTGCTGTTGTGC
AGTGGCTGACTCCGTTGTTTGAGGTTCTGGGGAAGCCTACGTTTATGGGC
GAGGCGGGTTGTGGGCAAAGCTGTAAAATTGCGAATCAGATTGTGGTGGG
AGCAAACTTGTTGGGACTGAGTGAAGGNTTGGTGTTTGCTGATA
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