FC931932

Overview
NameFC931932
Unique NameFC931932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 55/190 (28.95%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  115 SKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            SKT +G+IG+G MGN MA  L+  GY + +Y        + +  G  +A+SP DVA+ +  + +M+ +  +   +    +GI+  +  G++ +D+++  P++++E+ K   +     +DAPVSGG   AR G L     G          L   +G    + G  G GQS KI N +++  +++G +E +
Sbjct:   37 SKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAM 226          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 61/218 (27.98%), Postives = 108/218 (49.54%), Query Frame = 1
Query:   40 PQSPSSLSLINSANMETPYPKPITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG----KPTFMGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            P + +SL+ + S +M          SKT +G+IG+G MGN MA  L+  GY + +Y        +    G  + +SP DVA+ +  + +M+ T  +        +GI+  +  G++ +D+++  P +++E+ K   +     +DAPVSGG   AR G L     G   V +      E+LG       + G  G GQ+ KI N +++  +++G +E +
Sbjct:   22 PPAVASLAAVCSRSMA---------SKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG---VEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAM 227          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 58/189 (30.69%), Postives = 99/189 (52.38%), Query Frame = 1
Query:  127 IGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            IG++G+G MG  MAS L+ AG+ + V+  +      L ++GAT+ A   ++AK+S  V +M+  P +    A   +    G+N   +++D+++  P L + + K    K    +DAPVSGG  GA    L     G  A    +  + E +GK  T  G  G GQ+ K+ N +++  +++G+SE +  A
Sbjct:   31 IGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITML--PNNAIVDASYDEMTADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLA 217          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: Y229_SYNY3 (Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803) GN=slr0229 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 55/194 (28.35%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  121 TRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSK--ALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG-KPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD 693
            ++I   G+GVMG+ MA  L+  GY    Y RT  +    +    G  +  S    A ++ ++ + VG  +DV+ + L   GI     P A+ +D ++     A E+    + +    +DAPV+GGD+GA +G L I   GD +  +   P+ + +G K    G +G GQ+ K+ NQ++ G + +  +E +  ++
Sbjct:    4 SKIAVFGLGVMGSPMAQNLVKNGYQTVGYNRTLERPSVQEAAKAGVKVVTSIAVAAANADIILTCVGDEKDVQQLILGSGGIAEYAKPQALIIDCSTIGKTAAYELATNLKLQGLRFLDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAEAIQLSE 197          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_DROME (Putative oxidoreductase GLYR1 homolog OS=Drosophila melanogaster GN=CG4747 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 60/218 (27.52%), Postives = 109/218 (50.00%), Query Frame = 1
Query:   49 PSSLSLINSANMETPYPKPITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGI--VSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD 693
            P +  +  S+   T   + I PS+   G++G+G+MG+ +   L+  G+ V V+ RT  K       GA +  +P DV +++ V+F  V  P+  + +     G+  +  LN  A YV+ ++  P  + +I +  ++ +   ++A + G    A +G L I A GD +V +     F+ + K T F+G  G      +  Q ++G +L+GL+E L  AD
Sbjct:  292 PEAQVIDMSSRSNTLADRDIVPSEQTFGFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFAEAGAEVKDTPMDVVEAADVIFCCVSDPKGAKDLVFGNCGVLQLKDLNNKA-YVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEGMLIILAGGDRSVFEECHSCFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVGLAEALALAD 508          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 57/198 (28.79%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  127 IGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNP--GAVYVDTTSSHPALAREI------FKVAREKDCW----AVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGL 681
            +G+IG+G MG  M + L+ AGY VTV+             G +   +P++VA+ S VV +M+ +   V  +    +G++ G N    A+++D+++  P   R+I        +  ++D W     +DAPVSGG + A  G L     G         P+ + +G+ + + G +G G + KI N + +  ++LG SE L
Sbjct:   40 VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEAL 237          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: MMSB_MYCTU (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis GN=mmsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  121 TRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE-VLGKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD 693
            T I ++G+G MG  M++ L+ AG+ V  +    + A    + G  +  S  +    + VV +M+ T + VR    D   +++   P  +++D+++     ARE+  +A       +DAPVSGG  GA    LA    GD + ++   P+ E + GK    G AG GQ+ K+ N +V+    + ++E  V A+
Sbjct:    2 TTIAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADVVITMLPTGEVVRRCYTD---VLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAE 190          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: MMSB_MYCBO (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium bovis GN=mmsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  121 TRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE-VLGKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD 693
            T I ++G+G MG  M++ L+ AG+ V  +    + A    + G  +  S  +    + VV +M+ T + VR    D   +++   P  +++D+++     ARE+  +A       +DAPVSGG  GA    LA    GD + ++   P+ E + GK    G AG GQ+ K+ N +V+    + ++E  V A+
Sbjct:    2 TTIAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADVVITMLPTGEVVRRCYTD---VLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAE 190          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_DROPS (Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18401 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 55/217 (25.35%), Postives = 105/217 (48.39%), Query Frame = 1
Query:   49 PSSLSLINSANMETPYPKPITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLN-PGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFAD 693
            P + ++  ++   T   + I PS+   G++G+G+MG+ +   L+  G+ V V+ RT  K       GA +  +P DV +++ ++F  V  P+  + +     G++   +     YV+ ++  P  + +I +  ++ +   ++A + G    A DG L I A GD  V +     F+ + K T F+G  G      +  Q +   +L+GL+E L  AD
Sbjct:  302 PETQAIDMNSRSNTLADRDIVPSELTFGFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFVEAGAEVKDTPMDVVEAADIIFCCVSDPKGAKDLVFGNCGVLQLKDLRNKAYVEMSTVDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAADGMLIILAGGDRTVFEECHSCFKTIAKNTFFLGNVGNACKVNLILQTIQAVSLVGLAEALALAD 518          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: YFJR_BACSU (Uncharacterized oxidoreductase yfjR OS=Bacillus subtilis GN=yfjR PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 55/183 (30.05%), Postives = 87/183 (47.54%), Query Frame = 1
Query:  124 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFMGEAGCGQSCKIANQIVVGANLLGLS 672
            +I  IG+G MG  +A  +L AGY +TVY RT  K   L ++GA  A +P   AKS+ +V +M+     V ++    DG++ GL    +++  ++     + ++     EK  + + APV G    A    L I  AG +   Q   PL + L +  F      G+  K AN   +  N L +S
Sbjct:    2 KIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGAQAADTPRLAAKSADIVITMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSLSQQIF----DVGEESKTANAAKISINFLLVS 180          
The following BLAST results are available for this feature:
BLAST of FC931932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
3HIDH_RAT1.972e-2028.953-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_BOVIN7.495e-2027.983-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_DROME2.848e-1930.69Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
Y229_SYNY38.286e-1928.35Uncharacterized oxidoreductase slr0229 OS=Synechoc... [more]
GLYR1_DROME8.286e-1927.52Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
3HIDH_ARATH2.411e-1828.79Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
MMSB_MYCTU9.162e-1828.65Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
MMSB_MYCBO9.162e-1828.65Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
GLYR1_DROPS1.563e-1725.35Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
YFJR_BACSU7.756e-1730.05Uncharacterized oxidoreductase yfjR OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC34202G03EF PostHarveN Citrus clementina cDNA clone C34202G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931932 ID=FC931932; Name=FC931932; organism=Citrus clementina; type=EST; length=694bp
GATGGTGCACGGCCTCACAAGCTCACTTCATTTTTCACTCCCCAAAGTCC
ATCTTCTCTCTCACTCATCAACTCTGCAAATATGGAAACTCCTTATCCAA
AGCCCATTACTCCCAGCAAGACCCGCATCGGCTGGATCGGGATCGGCGTA
ATGGGCAACGCCATGGCTTCCCGCCTTCTCTCCGCCGGCTACTCCGTCAC
CGTCTACGCTCGCACCTCATCAAAAGCCCTTCAGCTCCAATCACAAGGCG
CCACTCTCGCCGCTTCACCGTTCGACGTCGCCAAATCAAGCGGCGTTGTC
TTCTCCATGGTGGGCACCCCACAAGACGTTCGATCAATTGCCCTCGATCC
CGACGGCATCGTTTCTGGCCTCAACCCCGGCGCCGTCTACGTTGACACCA
CGAGCAGTCACCCTGCCCTCGCGCGGGAAATATTCAAAGTCGCAAGAGAG
AAAGATTGCTGGGCTGTTGACGCACCCGTATCCGGAGGCGACATTGGCGC
CCGAGATGGGAAATTAGCTATATTTGCTGCTGGTGATAGTGCTGTTGTGC
AGTGGCTGACTCCGTTGTTTGAGGTTCTGGGGAAGCCTACGTTTATGGGC
GAGGCGGGTTGTGGGCAAAGCTGTAAAATTGCGAATCAGATTGTGGTGGG
AGCAAACTTGTTGGGACTGAGTGAAGGNTTGGTGTTTGCTGATA
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