FC931933
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.053e-28 Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 1 Query: 304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE---EFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 +HNRLY A PL+E + A +G I D K K + E G +++ AK++ N++++M +G+ L+E ++ ++ GF+ A K G LA E +G+ ++ D V H DAIHRG Q+IP Sbjct: 487 KHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIP 611 HSP 2 Score: 68.5514 bits (166), Expect = 3.053e-28 Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 2 Query: 17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN 304 PV+ VA++ K DLPKL++ L+++AK D V + EE+GEH+I+G GELH+E+ + + + G E+ +P+V +RE V S V KSPN Sbjct: 392 PVITVAIEAKNTKDLPKLIDVLRQIAKEDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDAGVEVDVGEPIVVYREAVNGVS-PEVEGKSPN 486
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.075e-26 Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 1 Query: 304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 +HN+ Y+ L + + E I G + D P+ + + +E G DK+ ++ + IG N+ +D KG+Q+LNE + VV G + ++G LA E + G + D LH DAIHRG QVIP Sbjct: 484 RHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIP 604 HSP 2 Score: 63.929 bits (154), Expect = 2.075e-26 Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 2 Query: 17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN 304 PV+ +++ + DLPKL+E L++++K DP + + E++GEH+I+G GELHLE+ + ++ + G + +P+V +RE S + V SPN Sbjct: 390 PVITKSIEAQNMDDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPN 483
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.075e-26 Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 1 Query: 304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 +HN+ Y+ L + + E I G + D P+ + + +E G DK+ ++ + IG N+ +D KG+Q+LNE + VV G + ++G LA E + G + D LH DAIHRG QVIP Sbjct: 484 RHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIP 604 HSP 2 Score: 63.929 bits (154), Expect = 2.075e-26 Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 2 Query: 17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN 304 PV+ +++ + DLPKL+E L++++K DP + + E++GEH+I+G GELHLE+ + ++ + G + +P+V +RE S + V SPN Sbjct: 390 PVITKSIEAQNMDDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPN 483
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 1 Query: 283 CYEQVSKQHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 C+ + + N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IP Sbjct: 674 CFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIP 810 HSP 2 Score: 81.2629 bits (199), Expect = 5.769e-15 Identity = 44/112 (39.29%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 2 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331 KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH+I G GEL+L+ + DL+ + +I +DPVV+F E V+E S +++PN N I I +P Sbjct: 581 KFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEP 691
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23 Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 1 Query: 283 CYEQVSKQHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 C+ + + N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IP Sbjct: 674 CFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIP 810 HSP 2 Score: 80.4925 bits (197), Expect = 9.841e-15 Identity = 44/112 (39.29%), Postives = 72/112 (64.29%), Query Frame = 2 Query: 2 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331 KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH+I G GEL+L+ + DL + +I +DPVV+F E V+E S +++PN N I I +P Sbjct: 581 KFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLPKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEP 691
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23 Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 1 Query: 283 CYEQVSKQHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 C+ + + N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IP Sbjct: 673 CFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIP 809 HSP 2 Score: 81.2629 bits (199), Expect = 5.769e-15 Identity = 44/112 (39.29%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 2 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331 KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH+I G GEL+L+ + DL+ + +I +DPVV+F E V+E S +++PN N I I +P Sbjct: 580 KFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEP 690
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23 Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 1 Query: 283 CYEQVSKQHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 C+ + + N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IP Sbjct: 674 CFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIP 810 HSP 2 Score: 81.2629 bits (199), Expect = 5.769e-15 Identity = 44/112 (39.29%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 2 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331 KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH+I G GEL+L+ + DL+ + +I +DPVV+F E V+E S +++PN N I I +P Sbjct: 581 KFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEP 691
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23 Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = 1 Query: 283 CYEQVSKQHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 C+ + + N++ M A PLE+GLAE I++ + + K + ++ WD A+ IW FGP+ GPN++VD + L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IP Sbjct: 674 CFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIP 810 HSP 2 Score: 81.2629 bits (199), Expect = 5.769e-15 Identity = 44/112 (39.29%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 2 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331 KF+ + V+++AV+ S+LPK+++GL+++ KS P + +EESGEH+I G GEL+L+ + DL+ + +I +DPVV+F E V+E S +++PN N I I +P Sbjct: 581 KFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMY-SEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEP 691
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.607e-22 Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 2 Query: 2 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN 304 K PVV A++ K DLPKL+E LK + K DP + + +ESG+ +I+G G+LHLEI +++DF +II S+P+V +RE V + V KSPN Sbjct: 397 KHIFDPVVTKAIEPKDPRDLPKLIEVLKLIQKEDPTLKVEIDQESGQILISGLGDLHLEIVEYRIKNDFK--VDIITSNPIVVYRESV-KGQAGPVEGKSPN 495 HSP 2 Score: 58.5362 bits (140), Expect = 1.607e-22 Identity = 40/132 (30.30%), Postives = 66/132 (50.00%), Query Frame = 1 Query: 286 YEQVSKQHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 Y V K + LY + R E+ L + +G+I ++ ++ + G+ ++ A++ E NM DM +G+ ++ E+ D V+ F G +A E G+ ++ D LH DAIHRG GQVIP Sbjct: 501 YITVEKMPDELYWKLR--EKLLKGELPEGKIKKMNEDIIKHLM---SLGFTREEAQRCKVIYRE----NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIP 623
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.125e-21 Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 1 Query: 283 CYEQVSKQHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMV------VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681 C+ + NR+ M PLE+G++ I++G++ K S+ + + WD ++ IW FGP+ G N++ D+ K V LN +K+ + GFQW ++EG L +E +R + F + DVVL + I+RGGGQ+IP Sbjct: 687 CFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNV--LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIP 823 HSP 2 Score: 70.4774 bits (171), Expect = 1.018e-11 Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 20 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331 V +VAV+ S+LPKL++GL++ KS P+ + +EESGEH I G GE++++ L DL+ EI SDPV F E ++ S S +PN N I + +P Sbjct: 600 VFKVAVEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLR-TLYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMVVEP 704 The following BLAST results are available for this feature:
BLAST of FC931933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931933 ID=FC931933; Name=FC931933; organism=Citrus clementina; type=EST; length=712bpback to top |