FC931933

Overview
NameFC931933
Unique NameFC931933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 1
Query:  304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---VRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPLL 687
            +HN+LYM A P+EE +  A  +G+I   D  K   V ++    E G +++ AKK+          NM+V+M KG+  L+E ++ ++ GF+   K G LA E  +G+  ++ D   H DAIHRG  Q+IP +
Sbjct:  487 KHNKLYMIAEPMEESVYAAYVEGKIHDEDFKKKTNVDAETRLIEAGLEREQAKKVMSI----YNGNMIVNMTKGIVQLDEARELIIEGFKEGVKGGPLASERAQGVKIKLIDATFHEDAIHRGPSQIIPAI 613          

HSP 2 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 2
Query:   17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331
            PV+ VA++ K   DLPKL+E L+++ + D  V   + EE+GEH+I+G GELH+E+ + + +    GG E+   +P++ +RE +   S   +  KSPN  N +  I +P
Sbjct:  392 PVITVAIEAKNTKDLPKLIEILRQIGREDNTVRIEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIIVYRETITGTS-PEIEGKSPNKHNKLYMIAEP 497          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 46/129 (35.66%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRS---KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681
            +HN+LYM A P++E +  A  +G+I   D  K  +   +    E G DKD AKK+          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP
Sbjct:  487 KHNKLYMIAEPMDESVYAAYVEGKIHDEDYKKKTTADGEARLVEAGLDKDQAKKVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIP 611          

HSP 2 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331
            PV+ VA++ K   DLPKL+E L+++A+ D  V   + EE+GEH+I+G GELH+E+ + + +    GG E+   +P+V +RE +   S   +  KSPN  N +  I +P
Sbjct:  392 PVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETITGTS-PEIEGKSPNKHNKLYMIAEP 497          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRS---KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681
            +HN+LYM A P+EE +  A  +G++   D  K  +   +    E G +KD AKK+          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+  ++ D   H DAIHRG  Q+IP
Sbjct:  487 KHNKLYMIAEPMEESVYAAYVEGKLHDEDYKKKTTADGEARLVEAGLEKDQAKKVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIKLMDATFHEDAIHRGPAQIIP 611          

HSP 2 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 2
Query:   17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331
            PV+ VA++ K   DLPKL+E L+++A+ D  V   + EE+GEH+I+G GELH+E+ + + +    GG E+   +P+V +RE ++  S   +  KSPN  N +  I +P
Sbjct:  392 PVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETIMGTS-PEIEGKSPNKHNKLYMIAEP 497          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRS---KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681
            +HN+LYM A P+EE +  A  +G++   D  K  +   +    E G +KD AKK+          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP
Sbjct:  487 KHNKLYMIAEPMEESVYAAYVEGKLHDEDYKKKTTADGEARLVEAGLEKDQAKKVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIP 611          

HSP 2 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 2
Query:   17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331
            PV+ VA++ K   DLPKL+E L+++A+ D  V   + EE+GEH+I+G GELH+E+ + + +    GG E+   +P+V +RE ++  S   +  KSPN  N +  I +P
Sbjct:  392 PVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETIMGTS-PEIEGKSPNKHNKLYMIAEP 497          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    5 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKS 274
            F  +P+VRVAV+     ++ KLV GLK L ++DP V   +E +GEHI+  AGELHLE CLKDL + F  G EI  S+P + +RE  L  S
Sbjct:  673 FHFTPIVRVAVEPANPVEMSKLVRGLKLLDQADPCVHTYVENTGEHILCTAGELHLERCLKDLTERF-AGIEITHSEPAIPYRETFLSAS 761          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    5 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIV 262
            F  +P+VRVAV+ K  S++P+LV+G+K L ++DP V   ++E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRE +
Sbjct:  612 FEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERF-AKIHISVSEPIIPFRETI 696          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    5 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIV 262
            F  +P+VRVAV+ K  S++P+LV+G+K L ++DP V   ++E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRE +
Sbjct:  612 FEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERF-AKIHISVSEPIIPFRETI 696          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 43/129 (33.33%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  304 QHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRS---KILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIP 681
            +HN+LYM A P++E +  A  +G+I   D  K  +   +    E G +K+ AK++          NM+V+M +G+  L+E ++ ++ GF+   + G LA E ++G+   + D   H DAIHRG  Q+IP
Sbjct:  487 KHNKLYMIAEPMDESVYAAYVEGKIHDEDYKKKTTADGEARLVEAGLEKEQAKRVMSI----YNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIP 611          

HSP 2 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   17 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVLEKSCRTVMSKSPN--NTIVSIWKP 331
            PV+ VA++ K   DLPKL+E L+++A+ D  V   + EE+GEH+I+G GELH+E+ + + +    GG E+   +P+V +RE +   S   +  KSPN  N +  I +P
Sbjct:  392 PVITVAIEAKNTKDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETITGTS-PEIEGKSPNKHNKLYMIAEP 497          
BLAST of FC931933 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 2
Query:   11 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFREIVL 265
            + P+VRVA++     ++ KLV GL  L ++DP V  ++EE+GEH+I  AGE+HLE CLKDL++ F    EI  S P+V +RE  +
Sbjct:  560 MEPIVRVALEPVRPFEMNKLVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERF-AKIEIQASQPLVPYRETTI 643          
The following BLAST results are available for this feature:
BLAST of FC931933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
EF2_METVS3.995e-1635.88Elongation factor 2 OS=Methanococcus vannielii (st... [more]
EF2_METM75.218e-1635.66Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METM58.901e-1634.88Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METMP1.163e-1534.88Elongation factor 2 OS=Methanococcus maripaludis G... [more]
RIA1_YEAST4.418e-1548.89Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
ETUD1_MOUSE9.841e-1544.19Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN9.841e-1544.19Elongation factor Tu GTP-binding domain-containing... [more]
EF2_METM69.841e-1533.33Elongation factor 2 OS=Methanococcus maripaludis (... [more]
RIA1_SCHPO1.203e-1245.88Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC34202G04EF PostHarveN Citrus clementina cDNA clone C34202G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931933 ID=FC931933; Name=FC931933; organism=Citrus clementina; type=EST; length=712bp
GAAGTTTTCCGTCTCACCTGTGGTTCGTGTGGCTGTACAGTGCAAAGTTG
CATCTGATCTCCCTAAGCTTGTTGAAGGTCTTAAACGGTTGGCCAAGTCA
GATCCCATGGTTGTCTGTTCCATGGAGGAATCTGGAGAGCATATCATTGC
CGGTGCAGGAGAACTCCATCTTGAGATCTGTTTGAAGGATTTGCAGGATG
ATTTCATGGGTGGTGCTGAGATTATCAAATCTGATCCTGTTGTGTCCTTC
CGTGAGATTGTCCTTGAGAAGTCCTGCCGTACTGTTATGAGCAAGTCTCC
AAACAACACAATCGTCTCTATATGGAAGCCCGGCCATTGGAGGAAGGTCT
TGCTGAGGCAATTGATGATGGTCGTATTGGTCCAAGGGATGATCCTAAGG
TTCGTTCTAAGATTCTGTCTGAGGAATTTGGTTGGGACAAGGATCTTGCC
AAGAAAATCTGGTGTTTTGGTCCTGAGACCATTGGTCCTAACATGGTTGT
GGATATGTGCAAGGGAGTTCAGTACTTGAATGAAATTAAGGATTCAGTTG
TTGCTGGGTTCCAGTGGGCATCAAAGGAAGGTGCATTGGCTGAAGAAAAC
ATGAGGGGCATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCCGATGC
TATCCACAGAGGTGGTGGCCAGGTTATTCCACTGCTAGAANGGTCATTTA
TACATCCCAGCT
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