FC931939

Overview
NameFC931939
Unique NameFC931939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig672 contig Ccv1_Contig672:139..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_XENTR (Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.740e-56
Identity = 110/180 (61.11%), Postives = 141/180 (78.33%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            YA   S++ VEGGHRAI FNRI GV+ D +  EG H   PWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP+A +LP +Y+ LG +Y+ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+I LDDV+IT L+F +E+T A+E+KQVA QEA+RA+F+
Sbjct:   34 YAVKESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRFPWFQYPIIYDIRARPRKISSPTGSKDLQMVNITLRVLSRPLASELPFMYQRLGLDYDERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSIILDDVAITELSFSREYTAAVESKQVAQQEAQRAQFL 213          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB_HUMAN (Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.579e-56
Identity = 108/174 (62.07%), Postives = 138/174 (79.31%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F + LDDVS+T LTFGKEFT A+EAKQVA QEAERA+F+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFV 199          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB_BOVIN (Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.579e-56
Identity = 108/174 (62.07%), Postives = 138/174 (79.31%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F + LDDVS+T LTFGKEFT A+EAKQVA QEAERA+F+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFV 199          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_BOVIN (Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.105e-56
Identity = 110/180 (61.11%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   34 YGIRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: L2CC_DROME (Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2)37Cc PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.105e-56
Identity = 104/174 (59.77%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            +LYNVEGGHRA++F+R  G+K+ V  EGTH  IPW +RP+I+D+R++P  V   TGS DLQ V I LR+L RP+ DQLP IY  LG++Y+ERVLPSI  E LKAVVAQ++A +LITQRE VS+ + + LT RA  F   LDD+S+T LTFG+EFT A+E KQVA QEAE+A+F+
Sbjct:   26 ALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREMVSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKARFV 199          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB_CHICK (Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.320e-55
Identity = 106/174 (60.92%), Postives = 137/174 (78.74%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  +   TGS DLQ V I LR+L RPV  QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++ + LTERAA F + LDDVS+T LTFGKEFT A+E KQVA QEAERA+FI
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDTVVGEGTHFLIPWVQKPIIFDCRSRPRNIPVITGSKDLQNVNITLRILFRPVTAQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSEDLTERAATFGLILDDVSLTHLTFGKEFTEAVEMKQVAQQEAERARFI 199          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_CHICK (Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.320e-55
Identity = 110/180 (61.11%), Postives = 139/180 (77.22%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            Y    S++ VEGG RAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVLTRP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   34 YGVRESVFIVEGGQRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLTRPNAAELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB1_SCHPO (Prohibitin-1 OS=Schizosaccharomyces pombe GN=phb1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.171e-53
Identity = 102/174 (58.62%), Postives = 136/174 (78.16%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            S+Y+V GG RA++F+R+ GV+ +V  EGTH +IPW ++ ++YDVR RP  + +TTGS DLQMV + LRVL RP    LP IY+ LG +Y+ERVLPSI +E LK+VVAQ++A++LITQRE VS +IR+ L +RA  F I L+DVSIT +TFGKEFT A+E KQ+A QEAERA+F+
Sbjct:   25 SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDLQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFL 198          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB1_DICDI (Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.407e-52
Identity = 100/177 (56.50%), Postives = 139/177 (78.53%), Query Frame = 1
Query:  142 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            A  S+Y V+GG RA++F+RI GVK+K   EGTH ++PW ++P+I+D+R+ P  ++S TGS DLQ V + +RVL RP  + LP+I+  LG +Y+ER+LPS+ +E LK+VVAQY+A++LITQRE VS+EIR+ L +RA  FN+ LDDVSIT L+F ++FT AIE KQVA QEAER+K+I
Sbjct:   22 AQSSMYTVDGGQRAVIFDRISGVKEKSVGEGTHFIMPWLQKPIIFDIRSSPRNIKSDTGSKDLQTVSVTVRVLFRPDVEHLPSIFSKLGLDYDERILPSLGNEVLKSVVAQYDATELITQREVVSKEIRESLMKRAKEFNLLLDDVSITHLSFSQDFTNAIEHKQVAQQEAERSKYI 198          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB1_YEAST (Prohibitin-1 OS=Saccharomyces cerevisiae GN=PHB1 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.401e-52
Identity = 99/175 (56.57%), Postives = 137/175 (78.29%), Query Frame = 1
Query:  148 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            +S+Y+V+GG R ++F+RI GVK +V  EGTH ++PW ++ +IYDVR +P  + + TG+ DLQMV + LRVL RP   QLP IY+ LG +Y+ERVLPSI +E LK++VAQ++A++LITQRE +S++IRK L+ RA  F I L+DVSIT +TFG EFT A+E KQ+A Q+AERAKF+
Sbjct:   27 YSMYDVKGGSRGVIFDRINGVKQQVVGEGTHFLVPWLQKAIIYDVRTKPKSIATNTGTKDLQMVSLTLRVLHRPEVLQLPAIYQNLGLDYDERVLPSIGNEVLKSIVAQFDAAELITQREIISQKIRKELSTRANEFGIKLEDVSITHMTFGPEFTKAVEQKQIAQQDAERAKFL 201          
The following BLAST results are available for this feature:
BLAST of FC931939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB2_XENTR2.740e-5661.11Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV... [more]
PHB_HUMAN3.579e-5662.07Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1[more]
PHB_BOVIN3.579e-5662.07Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1[more]
PHB2_BOVIN6.105e-5661.11Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1[more]
L2CC_DROME6.105e-5659.77Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2... [more]
PHB_CHICK2.320e-5560.92Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1[more]
PHB2_CHICK2.320e-5561.11Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1[more]
PHB1_SCHPO2.171e-5358.62Prohibitin-1 OS=Schizosaccharomyces pombe GN=phb1 ... [more]
PHB1_DICDI1.407e-5256.50Prohibitin-1, mitochondrial OS=Dictyostelium disco... [more]
PHB1_YEAST2.401e-5256.57Prohibitin-1 OS=Saccharomyces cerevisiae GN=PHB1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34202G10EF PostHarveN Citrus clementina cDNA clone C34202G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931939 ID=FC931939; Name=FC931939; organism=Citrus clementina; type=EST; length=673bp
GGACTTGGGTGTAGGGTTTTAGCAGAGCTGTTTCAGGAAAAAATGAACTT
CAACAATGTCAAAGTTCCCAAGATGCCGGGTGGTGGCGCAGTCTCTGCTC
TAATTAAGGTGGGGGTTATTGGTGGGCTTGGTTTGTACGCTGCTACTCAT
AGTCTCTACAATGTCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCAT
AGTTGGTGTCAAAGATAAGGTTTATCCCGAGGGGACGCATCTTATGATTC
CATGGTTTGAGAGGCCTGTCATCTATGATGTTCGTGCACGACCCAACTTA
GTGGAGAGTACTACTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCT
TAGGGTGCTCACTCGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAA
CCCTTGGTGAGAACTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAA
ACTTTAAAAGCTGTGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACA
GCGTGAGACTGTAAGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAG
CCTATTTCAACATTGCTCTGGATGATGTCTCCATTACGAGCCTTACTTTT
GGCAAGGAATTTACATTTGCCATTGAAGCTAAACAGGTGGCCGCACAAGA
AGCAGAGAGGGCTAAATTTATTG
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