FC931939

Overview
NameFC931939
Unique NameFC931939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB1_CAEEL (Mitochondrial prohibitin complex protein 1 OS=Caenorhabditis elegans GN=phb-1 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.123e-52
Identity = 99/177 (55.93%), Postives = 133/177 (75.14%), Query Frame = 1 
Query:  142 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            A  +LYNV+GG RA++F+R  GVK++V  EGTH +IPW ++P+I+D+R+ P  V + TGS DLQ V I LR+L RP  D+LP IY  +G +Y ERVLPSI +E LKAVVAQ++A ++ITQRE VS+     L ERAA F + LDD++IT L FG+EFT A+E KQVA QEAE+A+++
Sbjct:   26 AQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKARYL 202
The following BLAST results are available for this feature:
BLAST of FC931939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB1_CAEEL9.123e-5255.93Mitochondrial prohibitin complex protein 1 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC34202G10EF PostHarveN Citrus clementina cDNA clone C34202G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931939 ID=FC931939; Name=FC931939; organism=Citrus clementina; type=EST; length=673bp
GGACTTGGGTGTAGGGTTTTAGCAGAGCTGTTTCAGGAAAAAATGAACTT
CAACAATGTCAAAGTTCCCAAGATGCCGGGTGGTGGCGCAGTCTCTGCTC
TAATTAAGGTGGGGGTTATTGGTGGGCTTGGTTTGTACGCTGCTACTCAT
AGTCTCTACAATGTCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCAT
AGTTGGTGTCAAAGATAAGGTTTATCCCGAGGGGACGCATCTTATGATTC
CATGGTTTGAGAGGCCTGTCATCTATGATGTTCGTGCACGACCCAACTTA
GTGGAGAGTACTACTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCT
TAGGGTGCTCACTCGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAA
CCCTTGGTGAGAACTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAA
ACTTTAAAAGCTGTGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACA
GCGTGAGACTGTAAGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAG
CCTATTTCAACATTGCTCTGGATGATGTCTCCATTACGAGCCTTACTTTT
GGCAAGGAATTTACATTTGCCATTGAAGCTAAACAGGTGGCCGCACAAGA
AGCAGAGAGGGCTAAATTTATTG
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