FC931940

Overview
NameFC931940
Unique NameFC931940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:64..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.475e-64
Identity = 114/170 (67.06%), Postives = 145/170 (85.29%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            Q+ VRE L  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEF+TFNF+MQA+DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ YAA Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FLE
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRCPIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLE 171          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.442e-63
Identity = 114/173 (65.90%), Postives = 142/173 (82.08%), Query Frame = 2
Query:  149 AVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            A  Q+ VR+ +N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EF+TFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LE
Sbjct:   29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLE 201          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.442e-63
Identity = 114/173 (65.90%), Postives = 142/173 (82.08%), Query Frame = 2
Query:  149 AVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            A  Q+ VR+ +N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EF+TFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LE
Sbjct:   29 AALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLE 201          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.460e-63
Identity = 114/170 (67.06%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            Q+ VRE L  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEF+TFNF+MQA DHI+NSAAK++YMS GQ   PIVFRGPNGAA+ V AQHSQ Y A Y+ VPGLKV++PYS+ED +GL+  AIRD +PV+FLE
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKCPIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLE 171          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.460e-63
Identity = 113/170 (66.47%), Postives = 143/170 (84.12%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            Q+ VRE L  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEF+TFNF+MQA DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PVVFLE
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLE 171          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.197e-63
Identity = 116/170 (68.24%), Postives = 141/170 (82.94%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            Q  +RE L  A+ EEM  D +VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPI+E GF+GIGVGAA  GL+PV+EF+T NFSMQAIDHIINSAAK++YMS GQ+  PIVFRGPNGAA  VGAQH+Q +  WYA+VPGL VL+PY + DA+GLLKAAIR  DPVVFLE
Sbjct:  138 QQTLREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLE 307          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.720e-62
Identity = 111/170 (65.29%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            Q+ VRE L  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ GL+P+VEF+TFNF+MQA DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FLE
Sbjct:    2 QITVREALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLE 171          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.720e-62
Identity = 111/170 (65.29%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            Q+ VRE L  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ GL+P+VEF+TFNF+MQA DHI+NSAAK++YMS GQ+  PIVFRGPNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FLE
Sbjct:    2 QITVREALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLE 171          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.191e-59
Identity = 109/180 (60.56%), Postives = 137/180 (76.11%), Query Frame = 2
Query:  128 NLRNYSSAVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            ++R  +S    + VR+ LN+ALDEE+  D +VFL+GEEV +Y GAYKISKGL +KYG  R+ DTPITE    G+ VGAA  GL+P+ EF++ NFSMQ IDHIINSAAK++YMS+G+  VPIVFRG NGAA GV  QHSQ + AW+   PG+KV+ PY  EDARGLLKAA+RD +PV+ LE
Sbjct:   23 SVRRLASGTLNVTVRDALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVPIVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLE 202          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.098e-42
Identity = 84/170 (49.41%), Postives = 119/170 (70.00%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            ++ + E L  A+DEEM+ D +VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GLKPVVE +  +F + A + I N+A   +Y S G  S+P+V RGP G    + A+HSQ   A++ +VPGLK+++  +  +A+GLLKAAIRD +PV+FLE
Sbjct:    4 KLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLE 173          
The following BLAST results are available for this feature:
BLAST of FC931940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_RICBR6.475e-6467.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PONAB1.442e-6365.90Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN1.442e-6365.90Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE2.460e-6367.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN2.460e-6366.47Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO4.197e-6368.24Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY2.720e-6265.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR2.720e-6265.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU8.191e-5960.56Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CYAME9.098e-4249.41Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34202G11EF PostHarveN Citrus clementina cDNA clone C34202G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931940 ID=FC931940; Name=FC931940; organism=Citrus clementina; type=EST; length=694bp
GGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGAGTTGA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGACTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCGTGACA
TTTAACTTCTCTATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAA
ATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTTCAGAG
GGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGTTAC
GCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATACAG
TTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGGATC
CTGTTGTTTTTCTTGAAATGAGTTGTTATATGGTGAGTCATTCC
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