FC931940

Overview
NameFC931940
Unique NameFC931940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:64..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 76/172 (44.19%), Postives = 118/172 (68.60%), Query Frame = 2
Query:  152 VKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            + + ++ E LN  + EE+  DPKVF++GE++G Y G+YK++KGL EKYG  R+LDTPI E  FTGI +GAA  GL+P++E +   F + A + I N+A   +Y S G  + P+V RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K+AIR  +P++F E
Sbjct:    1 MSEKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            ++++ E L  ALDEEM  DP V +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  GL+P+VE +   F + A + I N+A   +Y S G   +PIV RGP G    +GA+HSQ   +++ SVPGL++++  +  + +GLLK+AIR+ +PV+F E
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 79/172 (45.93%), Postives = 118/172 (68.60%), Query Frame = 2
Query:  152 VKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            + ++ + + L +A DEEM+ DP V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GL+P+VE +  +F + A + I N+A    Y S G  ++P+V RGP G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+AIRD +PVVF E
Sbjct:    1 MSKIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = 2
Query:  152 VKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            + +M++ E L   L EEM  DPKV +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  GL+PVVE +   F + A + I N+A   +Y S    ++PIV RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K++IR  +PV+  E
Sbjct:    1 MSEMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.992e-40
Identity = 78/170 (45.88%), Postives = 114/170 (67.06%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            ++++ + L  A DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  F G+ +GAA  GL+P+VE +  +F + A + I N+A    Y S G   +PIV RGP G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+AIRD +PV+F E
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.520e-40
Identity = 76/170 (44.71%), Postives = 115/170 (67.65%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            ++++ E L   L EEM  DP+V +MGE+VG Y G+YK++KG  E+YG  R+LDTPI E  FTG+ +GAA  GL+PVVE +   F + A + I N+A   +Y S G  ++PIV RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K+AIR  +P++  E
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.520e-39
Identity = 78/172 (45.35%), Postives = 116/172 (67.44%), Query Frame = 2
Query:  152 VKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            + ++ + + L +A DEEM  D  V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GL+P+VE +  +F + A + I N+A    Y S G  ++P+V RGP G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+AIRD +PVVF E
Sbjct:    1 MSKVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 78/169 (46.15%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  161 MMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            M + + LN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA   G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G     G  HSQ   A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 78/169 (46.15%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  161 MMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            M + + LN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA   G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G     G  HSQ   A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.606e-38
Identity = 76/165 (46.06%), Postives = 108/165 (65.45%), Query Frame = 2
Query:  173 ETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            + +N A+ EEM  D +VF++GE+VG   G +K + GL E++G ERV+DTP+ E+   G+G+GAA YG++P+ E    +F M A++ II+ AAK  Y S+   S PIV R P G        HSQ   A +A+ PGLK++ P +  DA+GLLKAA+RD DPV+F E
Sbjct:    8 DAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCPIVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFE 172          
The following BLAST results are available for this feature:
BLAST of FC931940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CHAVU2.027e-4144.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL2.027e-4147.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE2.927e-4045.93Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAPU3.822e-4045.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL4.992e-4045.88Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR6.520e-4044.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU5.520e-3945.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET89.415e-3946.152-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET29.415e-3946.152-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU1.606e-3846.062-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]

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Properties
Property NameValue
Genbank descriptionC34202G11EF PostHarveN Citrus clementina cDNA clone C34202G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931940 ID=FC931940; Name=FC931940; organism=Citrus clementina; type=EST; length=694bp
GGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGAGTTGA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGACTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCGTGACA
TTTAACTTCTCTATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAA
ATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTTCAGAG
GGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGTTAC
GCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATACAG
TTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGGATC
CTGTTGTTTTTCTTGAAATGAGTTGTTATATGGTGAGTCATTCC
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